Cluster: Rep_527_CGC43
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_527
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_527_c_0 | Rep_527_c_0_2613 | 3049525 | 3052692 | + | 1.B.14.6.1 |
| pfam | Rep_527_c_0 | Rep_527_c_0_2614 | 3052712 | 3054535 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2615 | 3054666 | 3056444 | + | GH110 |
| TC | Rep_527_c_0 | Rep_527_c_0_2616 | 3056557 | 3058251 | - | 2.A.58.2.2 |
Gene ID: Rep_527_c_0_2613
Type: TC
Location: 3049525 - 3052692 (+)
Type: TC
Location: 3049525 - 3052692 (+)
Gene ID: Rep_527_c_0_2614
Type: pfam
Location: 3052712 - 3054535 (+)
Type: pfam
Location: 3052712 - 3054535 (+)
Gene ID: Rep_527_c_0_2615
Type: CAZyme
Location: 3054666 - 3056444 (+)
Type: CAZyme
Location: 3054666 - 3056444 (+)
Gene ID: Rep_527_c_0_2616
Type: TC
Location: 3056557 - 3058251 (-)
Type: TC
Location: 3056557 - 3058251 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.