Cluster: Rep_527_CGC41
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_527
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2580 | 3010954 | 3012807 | - | GH35 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2581 | 3012906 | 3015416 | - | GH51_2 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2582 | 3015443 | 3017365 | - | GH43_19 | GH43_34 |
| pfam | Rep_527_c_0 | Rep_527_c_0_2583 | 3017547 | 3018539 | + | MliC | Lipocalin_3 |
| TC | Rep_527_c_0 | Rep_527_c_0_2584 | 3018552 | 3019517 | + | 2.A.19.5.2 |
Gene ID: Rep_527_c_0_2580
Type: CAZyme
Location: 3010954 - 3012807 (-)
Type: CAZyme
Location: 3010954 - 3012807 (-)
Gene ID: Rep_527_c_0_2581
Type: CAZyme
Location: 3012906 - 3015416 (-)
Type: CAZyme
Location: 3012906 - 3015416 (-)
Gene ID: Rep_527_c_0_2582
Type: CAZyme
Location: 3015443 - 3017365 (-)
Type: CAZyme
Location: 3015443 - 3017365 (-)
Gene ID: Rep_527_c_0_2583
Type: pfam
Location: 3017547 - 3018539 (+)
Type: pfam
Location: 3017547 - 3018539 (+)
Gene ID: Rep_527_c_0_2584
Type: TC
Location: 3018552 - 3019517 (+)
Type: TC
Location: 3018552 - 3019517 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.