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Cluster: Rep_527_CGC40

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_527_c_0 Rep_527_c_0_2551 2971802 2973151 - 2.A.66.1.45
CAZyme Rep_527_c_0 Rep_527_c_0_2552 2973329 2975497 + GH89
NULL(UNKNOWN) Rep_527_c_0 Rep_527_c_0_2553 2975534 2976601 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_527_c_0 Rep_527_c_0_2554 2976632 2979622 + 1.B.14.6.1
pfam Rep_527_c_0 Rep_527_c_0_2555 2979644 2981290 + SusD_RagB | SusD-like_3
CAZyme Rep_527_c_0 Rep_527_c_0_2556 2981475 2983793 + GH92
CAZyme Rep_527_c_0 Rep_527_c_0_2557 2983829 2985229 + GH28
TF Rep_527_c_0 Rep_527_c_0_2558 2985333 2989484 - HTH_AraC
TC Rep_527_c_0 Rep_527_c_0_2559 2989497 2990669 - 2.A.1.2.14
Gene ID: Rep_527_c_0_2551
Type: TC
Location: 2971802 - 2973151 (-)
Gene ID: Rep_527_c_0_2552
Type: CAZyme
Location: 2973329 - 2975497 (+)
Gene ID: Rep_527_c_0_2553
Type:
Location: 2975534 - 2976601 (+)
Gene ID: Rep_527_c_0_2554
Type: TC
Location: 2976632 - 2979622 (+)
Gene ID: Rep_527_c_0_2555
Type: pfam
Location: 2979644 - 2981290 (+)
Gene ID: Rep_527_c_0_2556
Type: CAZyme
Location: 2981475 - 2983793 (+)
Gene ID: Rep_527_c_0_2557
Type: CAZyme
Location: 2983829 - 2985229 (+)
Gene ID: Rep_527_c_0_2558
Type: TF
Location: 2985333 - 2989484 (-)
Gene ID: Rep_527_c_0_2559
Type: TC
Location: 2989497 - 2990669 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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