Cluster: Rep_527_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_527
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_527_c_0 | Rep_527_c_0_306 | 359736 | 360641 | + | 2.A.7.3.57 |
| pfam | Rep_527_c_0 | Rep_527_c_0_307 | 360894 | 361907 | - | ApbE |
| TC | Rep_527_c_0 | Rep_527_c_0_308 | 361912 | 362484 | - | 2.A.107.1.2 |
| pfam | Rep_527_c_0 | Rep_527_c_0_309 | 362490 | 363176 | - | DUF6048 |
| pfam | Rep_527_c_0 | Rep_527_c_0_310 | 363184 | 363684 | - | DUF6452 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_311 | 363684 | 364637 | - | GT2 |
Gene ID: Rep_527_c_0_306
Type: TC
Location: 359736 - 360641 (+)
Type: TC
Location: 359736 - 360641 (+)
Gene ID: Rep_527_c_0_307
Type: pfam
Location: 360894 - 361907 (-)
Type: pfam
Location: 360894 - 361907 (-)
Gene ID: Rep_527_c_0_308
Type: TC
Location: 361912 - 362484 (-)
Type: TC
Location: 361912 - 362484 (-)
Gene ID: Rep_527_c_0_309
Type: pfam
Location: 362490 - 363176 (-)
Type: pfam
Location: 362490 - 363176 (-)
Gene ID: Rep_527_c_0_310
Type: pfam
Location: 363184 - 363684 (-)
Type: pfam
Location: 363184 - 363684 (-)
Gene ID: Rep_527_c_0_311
Type: CAZyme
Location: 363684 - 364637 (-)
Type: CAZyme
Location: 363684 - 364637 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.