Cluster: Rep_527_CGC39
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_527
- CGC Family ID: CGCFAM_09504
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2536 | 2955837 | 2956979 | + | GH109 |
| pfam | Rep_527_c_0 | Rep_527_c_0_2537 | 2956991 | 2958082 | - | AA_kinase | PUA |
| pfam | Rep_527_c_0 | Rep_527_c_0_2538 | 2958536 | 2959318 | + | S6PP | Hydrolase_3 |
| TC | Rep_527_c_0 | Rep_527_c_0_2539 | 2959498 | 2961921 | + | 1.B.14.3.1 |
Gene ID: Rep_527_c_0_2536
Type: CAZyme
Location: 2955837 - 2956979 (+)
Type: CAZyme
Location: 2955837 - 2956979 (+)
Gene ID: Rep_527_c_0_2537
Type: pfam
Location: 2956991 - 2958082 (-)
Type: pfam
Location: 2956991 - 2958082 (-)
Gene ID: Rep_527_c_0_2538
Type: pfam
Location: 2958536 - 2959318 (+)
Type: pfam
Location: 2958536 - 2959318 (+)
Gene ID: Rep_527_c_0_2539
Type: TC
Location: 2959498 - 2961921 (+)
Type: TC
Location: 2959498 - 2961921 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.