Cluster: Rep_527_CGC38
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_527
- CGC Family ID: CGCFAM_02862
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_527_c_0 | Rep_527_c_0_2521 | 2936231 | 2936950 | - | 1.A.30.2.9 |
| pfam | Rep_527_c_0 | Rep_527_c_0_2522 | 2936954 | 2937667 | - | PdxJ |
| pfam | Rep_527_c_0 | Rep_527_c_0_2523 | 2937860 | 2938744 | + | NAD_kinase | NAD_kinase_C |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2524 | 2938827 | 2939768 | - | PL8_2 |
| pfam | Rep_527_c_0 | Rep_527_c_0_2525 | 2939821 | 2941896 | - | Lyase_N | Lyase_catalyt |
| TC | Rep_527_c_0 | Rep_527_c_0_2526 | 2941953 | 2943608 | - | 2.A.1.42.2 |
| TF | Rep_527_c_0 | Rep_527_c_0_2527 | 2943630 | 2944184 | - | HTH_3 |
| NULL(UNKNOWN) | Rep_527_c_0 | Rep_527_c_0_2528 | 2944278 | 2944667 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2529 | 2944716 | 2947286 | - | GH3 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2530 | 2947366 | 2948772 | - | GH109 |
| pfam | Rep_527_c_0 | Rep_527_c_0_2531 | 2948793 | 2950343 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_527_c_0 | Rep_527_c_0_2532 | 2950377 | 2953832 | - | 1.B.14.6.1 |
Gene ID: Rep_527_c_0_2521
Type: TC
Location: 2936231 - 2936950 (-)
Type: TC
Location: 2936231 - 2936950 (-)
Gene ID: Rep_527_c_0_2522
Type: pfam
Location: 2936954 - 2937667 (-)
Type: pfam
Location: 2936954 - 2937667 (-)
Gene ID: Rep_527_c_0_2523
Type: pfam
Location: 2937860 - 2938744 (+)
Type: pfam
Location: 2937860 - 2938744 (+)
Gene ID: Rep_527_c_0_2524
Type: CAZyme
Location: 2938827 - 2939768 (-)
Type: CAZyme
Location: 2938827 - 2939768 (-)
Gene ID: Rep_527_c_0_2525
Type: pfam
Location: 2939821 - 2941896 (-)
Type: pfam
Location: 2939821 - 2941896 (-)
Gene ID: Rep_527_c_0_2526
Type: TC
Location: 2941953 - 2943608 (-)
Type: TC
Location: 2941953 - 2943608 (-)
Gene ID: Rep_527_c_0_2527
Type: TF
Location: 2943630 - 2944184 (-)
Type: TF
Location: 2943630 - 2944184 (-)
Gene ID: Rep_527_c_0_2528
Type:
Location: 2944278 - 2944667 (+)
Type:
Location: 2944278 - 2944667 (+)
Gene ID: Rep_527_c_0_2529
Type: CAZyme
Location: 2944716 - 2947286 (-)
Type: CAZyme
Location: 2944716 - 2947286 (-)
Gene ID: Rep_527_c_0_2530
Type: CAZyme
Location: 2947366 - 2948772 (-)
Type: CAZyme
Location: 2947366 - 2948772 (-)
Gene ID: Rep_527_c_0_2531
Type: pfam
Location: 2948793 - 2950343 (-)
Type: pfam
Location: 2948793 - 2950343 (-)
Gene ID: Rep_527_c_0_2532
Type: TC
Location: 2950377 - 2953832 (-)
Type: TC
Location: 2950377 - 2953832 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.