Cluster: Rep_527_CGC36
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: Rep_527
- CGC Family ID: CGCFAM_00001
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2479 | 2875483 | 2877423 | - | GH97 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2480 | 2877509 | 2878867 | - | CBM32 |
| pfam | Rep_527_c_0 | Rep_527_c_0_2481 | 2878879 | 2880909 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_527_c_0 | Rep_527_c_0_2482 | 2880928 | 2884284 | - | 1.B.14.6.1 |
Gene ID: Rep_527_c_0_2479
Type: CAZyme
Location: 2875483 - 2877423 (-)
Type: CAZyme
Location: 2875483 - 2877423 (-)
Gene ID: Rep_527_c_0_2480
Type: CAZyme
Location: 2877509 - 2878867 (-)
Type: CAZyme
Location: 2877509 - 2878867 (-)
Gene ID: Rep_527_c_0_2481
Type: pfam
Location: 2878879 - 2880909 (-)
Type: pfam
Location: 2878879 - 2880909 (-)
Gene ID: Rep_527_c_0_2482
Type: TC
Location: 2880928 - 2884284 (-)
Type: TC
Location: 2880928 - 2884284 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.