Cluster: Rep_527_CGC30
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_527
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_527_c_0 | Rep_527_c_0_2241 | 2567497 | 2568414 | - | 3.A.1.128.7 |
| TC | Rep_527_c_0 | Rep_527_c_0_2242 | 2568735 | 2570027 | - | 2.A.40.7.6 |
| pfam | Rep_527_c_0 | Rep_527_c_0_2243 | 2570058 | 2570762 | - | DUF5020 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2244 | 2570878 | 2572968 | + | GH29 |
Gene ID: Rep_527_c_0_2241
Type: TC
Location: 2567497 - 2568414 (-)
Type: TC
Location: 2567497 - 2568414 (-)
Gene ID: Rep_527_c_0_2242
Type: TC
Location: 2568735 - 2570027 (-)
Type: TC
Location: 2568735 - 2570027 (-)
Gene ID: Rep_527_c_0_2243
Type: pfam
Location: 2570058 - 2570762 (-)
Type: pfam
Location: 2570058 - 2570762 (-)
Gene ID: Rep_527_c_0_2244
Type: CAZyme
Location: 2570878 - 2572968 (+)
Type: CAZyme
Location: 2570878 - 2572968 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.