Cluster: Rep_527_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_527
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_527_c_0 | Rep_527_c_0_216 | 262419 | 263849 | + | 2.A.114.1.4 |
| NULL(UNKNOWN) | Rep_527_c_0 | Rep_527_c_0_217 | 263950 | 265158 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_218 | 265227 | 266654 | - | GH28 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_219 | 266838 | 268121 | + | CE12 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_220 | 268334 | 269980 | + | CE12 | CE12 |
Gene ID: Rep_527_c_0_216
Type: TC
Location: 262419 - 263849 (+)
Type: TC
Location: 262419 - 263849 (+)
Gene ID: Rep_527_c_0_217
Type:
Location: 263950 - 265158 (+)
Type:
Location: 263950 - 265158 (+)
Gene ID: Rep_527_c_0_218
Type: CAZyme
Location: 265227 - 266654 (-)
Type: CAZyme
Location: 265227 - 266654 (-)
Gene ID: Rep_527_c_0_219
Type: CAZyme
Location: 266838 - 268121 (+)
Type: CAZyme
Location: 266838 - 268121 (+)
Gene ID: Rep_527_c_0_220
Type: CAZyme
Location: 268334 - 269980 (+)
Type: CAZyme
Location: 268334 - 269980 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.