Cluster: Rep_527_CGC29
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_527
- CGC Family ID: CGCFAM_01287
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2220 | 2530276 | 2531598 | - | GH29 |
| NULL(UNKNOWN) | Rep_527_c_0 | Rep_527_c_0_2221 | 2536856 | 2536948 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | Rep_527_c_0 | Rep_527_c_0_2222 | 2537898 | 2539862 | - | S09.UPC |
| TC | Rep_527_c_0 | Rep_527_c_0_2223 | 2539895 | 2541409 | - | 8.A.46.3.3 |
| TC | Rep_527_c_0 | Rep_527_c_0_2224 | 2541434 | 2544550 | - | 1.B.14.6.1 |
Gene ID: Rep_527_c_0_2220
Type: CAZyme
Location: 2530276 - 2531598 (-)
Type: CAZyme
Location: 2530276 - 2531598 (-)
Gene ID: Rep_527_c_0_2221
Type:
Location: 2536856 - 2536948 (-)
Type:
Location: 2536856 - 2536948 (-)
Gene ID: Rep_527_c_0_2222
Type: peptidase
Location: 2537898 - 2539862 (-)
Type: peptidase
Location: 2537898 - 2539862 (-)
Gene ID: Rep_527_c_0_2223
Type: TC
Location: 2539895 - 2541409 (-)
Type: TC
Location: 2539895 - 2541409 (-)
Gene ID: Rep_527_c_0_2224
Type: TC
Location: 2541434 - 2544550 (-)
Type: TC
Location: 2541434 - 2544550 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.