Cluster: Rep_527_CGC26
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_527
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2078 | 2347087 | 2349135 | - | CBM9 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2079 | 2349151 | 2350494 | - | GH29 |
| pfam | Rep_527_c_0 | Rep_527_c_0_2080 | 2350621 | 2352615 | - | SusD-like | SusD-like | SusD-like_2 | SusD-like_2 |
| TC | Rep_527_c_0 | Rep_527_c_0_2081 | 2352634 | 2355780 | - | 1.B.14.6.13 |
Gene ID: Rep_527_c_0_2078
Type: CAZyme
Location: 2347087 - 2349135 (-)
Type: CAZyme
Location: 2347087 - 2349135 (-)
Gene ID: Rep_527_c_0_2079
Type: CAZyme
Location: 2349151 - 2350494 (-)
Type: CAZyme
Location: 2349151 - 2350494 (-)
Gene ID: Rep_527_c_0_2080
Type: pfam
Location: 2350621 - 2352615 (-)
Type: pfam
Location: 2350621 - 2352615 (-)
Gene ID: Rep_527_c_0_2081
Type: TC
Location: 2352634 - 2355780 (-)
Type: TC
Location: 2352634 - 2355780 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.