Cluster: Rep_527_CGC24
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_527
- CGC Family ID: CGCFAM_00478
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_527_c_0 | Rep_527_c_0_1995 | 2244614 | 2247913 | - | 1.B.14.6.1 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_1996 | 2247935 | 2249185 | - | CBM32 |
| STP | Rep_527_c_0 | Rep_527_c_0_1997 | 2249206 | 2249724 | - | Sigma70_r2 | Sigma70_r4_2 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_1998 | 2249885 | 2251279 | - | GH28 |
Gene ID: Rep_527_c_0_1995
Type: TC
Location: 2244614 - 2247913 (-)
Type: TC
Location: 2244614 - 2247913 (-)
Gene ID: Rep_527_c_0_1996
Type: CAZyme
Location: 2247935 - 2249185 (-)
Type: CAZyme
Location: 2247935 - 2249185 (-)
Gene ID: Rep_527_c_0_1997
Type: STP
Location: 2249206 - 2249724 (-)
Type: STP
Location: 2249206 - 2249724 (-)
Gene ID: Rep_527_c_0_1998
Type: CAZyme
Location: 2249885 - 2251279 (-)
Type: CAZyme
Location: 2249885 - 2251279 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.