Cluster: Rep_527_CGC23
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_527
- CGC Family ID: CGCFAM_03976
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_527_c_0 | Rep_527_c_0_1950 | 2186962 | 2189610 | - | 1.B.14.6.14 |
| pfam | Rep_527_c_0 | Rep_527_c_0_1951 | 2189812 | 2191119 | - | Inos-1-P_synth | NAD_binding_5 |
| STP | Rep_527_c_0 | Rep_527_c_0_1952 | 2191342 | 2192289 | + | PfkB |
| TC | Rep_527_c_0 | Rep_527_c_0_1953 | 2192379 | 2193149 | - | 3.A.1.7.2 |
| TC | Rep_527_c_0 | Rep_527_c_0_1954 | 2193137 | 2194006 | - | 3.A.1.7.1 |
| TC | Rep_527_c_0 | Rep_527_c_0_1955 | 2194029 | 2194886 | - | 3.A.1.7.1 |
| TC | Rep_527_c_0 | Rep_527_c_0_1956 | 2194902 | 2195960 | - | 3.A.1.7.1 |
| NULL(UNKNOWN) | Rep_527_c_0 | Rep_527_c_0_1957 | 2196008 | 2197075 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_1958 | 2197248 | 2198786 | - | GH51_1 |
| pfam | Rep_527_c_0 | Rep_527_c_0_1959 | 2198995 | 2200020 | + | YceG |
| pfam | Rep_527_c_0 | Rep_527_c_0_1960 | 2200029 | 2200718 | - | TrkA_N |
| TC | Rep_527_c_0 | Rep_527_c_0_1961 | 2200722 | 2202506 | - | 2.A.38.4.2 |
Gene ID: Rep_527_c_0_1950
Type: TC
Location: 2186962 - 2189610 (-)
Type: TC
Location: 2186962 - 2189610 (-)
Gene ID: Rep_527_c_0_1951
Type: pfam
Location: 2189812 - 2191119 (-)
Type: pfam
Location: 2189812 - 2191119 (-)
Gene ID: Rep_527_c_0_1952
Type: STP
Location: 2191342 - 2192289 (+)
Type: STP
Location: 2191342 - 2192289 (+)
Gene ID: Rep_527_c_0_1953
Type: TC
Location: 2192379 - 2193149 (-)
Type: TC
Location: 2192379 - 2193149 (-)
Gene ID: Rep_527_c_0_1954
Type: TC
Location: 2193137 - 2194006 (-)
Type: TC
Location: 2193137 - 2194006 (-)
Gene ID: Rep_527_c_0_1955
Type: TC
Location: 2194029 - 2194886 (-)
Type: TC
Location: 2194029 - 2194886 (-)
Gene ID: Rep_527_c_0_1956
Type: TC
Location: 2194902 - 2195960 (-)
Type: TC
Location: 2194902 - 2195960 (-)
Gene ID: Rep_527_c_0_1957
Type:
Location: 2196008 - 2197075 (-)
Type:
Location: 2196008 - 2197075 (-)
Gene ID: Rep_527_c_0_1958
Type: CAZyme
Location: 2197248 - 2198786 (-)
Type: CAZyme
Location: 2197248 - 2198786 (-)
Gene ID: Rep_527_c_0_1959
Type: pfam
Location: 2198995 - 2200020 (+)
Type: pfam
Location: 2198995 - 2200020 (+)
Gene ID: Rep_527_c_0_1960
Type: pfam
Location: 2200029 - 2200718 (-)
Type: pfam
Location: 2200029 - 2200718 (-)
Gene ID: Rep_527_c_0_1961
Type: TC
Location: 2200722 - 2202506 (-)
Type: TC
Location: 2200722 - 2202506 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.