Cluster: Rep_527_CGC22
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_527
- CGC Family ID: CGCFAM_07156
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_527_c_0 | Rep_527_c_0_1918 | 2145675 | 2147306 | - | GH20 |
| NULL(UNKNOWN) | Rep_527_c_0 | Rep_527_c_0_1919 | 2147405 | 2147626 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_527_c_0 | Rep_527_c_0_1920 | 2147652 | 2149220 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_527_c_0 | Rep_527_c_0_1921 | 2149233 | 2152157 | - | 1.B.14.6.13 |
| pfam | Rep_527_c_0 | Rep_527_c_0_1922 | 2152610 | 2153671 | + | DDE_Tnp_1 | DUF772 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_1923 | 2154203 | 2156764 | + | GH84 |
Gene ID: Rep_527_c_0_1918
Type: CAZyme
Location: 2145675 - 2147306 (-)
Type: CAZyme
Location: 2145675 - 2147306 (-)
Gene ID: Rep_527_c_0_1919
Type:
Location: 2147405 - 2147626 (-)
Type:
Location: 2147405 - 2147626 (-)
Gene ID: Rep_527_c_0_1920
Type: pfam
Location: 2147652 - 2149220 (-)
Type: pfam
Location: 2147652 - 2149220 (-)
Gene ID: Rep_527_c_0_1921
Type: TC
Location: 2149233 - 2152157 (-)
Type: TC
Location: 2149233 - 2152157 (-)
Gene ID: Rep_527_c_0_1922
Type: pfam
Location: 2152610 - 2153671 (+)
Type: pfam
Location: 2152610 - 2153671 (+)
Gene ID: Rep_527_c_0_1923
Type: CAZyme
Location: 2154203 - 2156764 (+)
Type: CAZyme
Location: 2154203 - 2156764 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.