Cluster: Rep_527_CGC20
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_527
- CGC Family ID: CGCFAM_00536
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_527_c_0 | Rep_527_c_0_1598 | 1796135 | 1797238 | - | GH18 |
| TC | Rep_527_c_0 | Rep_527_c_0_1599 | 1797276 | 1798886 | - | 8.A.46.2.2 |
| TC | Rep_527_c_0 | Rep_527_c_0_1600 | 1798912 | 1800696 | - | 1.B.14.6.13 |
| pfam | Rep_527_c_0 | Rep_527_c_0_1601 | 1801117 | 1802178 | + | DDE_Tnp_1 | DUF772 |
| TC | Rep_527_c_0 | Rep_527_c_0_1602 | 1802255 | 1803310 | - | 1.B.14.6.13 |
Gene ID: Rep_527_c_0_1598
Type: CAZyme
Location: 1796135 - 1797238 (-)
Type: CAZyme
Location: 1796135 - 1797238 (-)
Gene ID: Rep_527_c_0_1599
Type: TC
Location: 1797276 - 1798886 (-)
Type: TC
Location: 1797276 - 1798886 (-)
Gene ID: Rep_527_c_0_1600
Type: TC
Location: 1798912 - 1800696 (-)
Type: TC
Location: 1798912 - 1800696 (-)
Gene ID: Rep_527_c_0_1601
Type: pfam
Location: 1801117 - 1802178 (+)
Type: pfam
Location: 1801117 - 1802178 (+)
Gene ID: Rep_527_c_0_1602
Type: TC
Location: 1802255 - 1803310 (-)
Type: TC
Location: 1802255 - 1803310 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.