Cluster: Rep_527_CGC18
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_527
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_527_c_0 | Rep_527_c_0_1070 | 1245272 | 1246078 | - | 1.A.30.2.4 |
| NULL(UNKNOWN) | Rep_527_c_0 | Rep_527_c_0_1071 | 1246218 | 1246640 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_527_c_0 | Rep_527_c_0_1072 | 1246838 | 1248142 | + | 2.A.35.1.5 |
| pfam | Rep_527_c_0 | Rep_527_c_0_1073 | 1248200 | 1248505 | + | DUF4286 |
| pfam | Rep_527_c_0 | Rep_527_c_0_1074 | 1248502 | 1249071 | + | RuvC |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_1075 | 1249108 | 1251084 | + | GH13_14 |
| TC | Rep_527_c_0 | Rep_527_c_0_1076 | 1251134 | 1252585 | + | 3.A.1.131.2 |
Gene ID: Rep_527_c_0_1070
Type: TC
Location: 1245272 - 1246078 (-)
Type: TC
Location: 1245272 - 1246078 (-)
Gene ID: Rep_527_c_0_1071
Type:
Location: 1246218 - 1246640 (-)
Type:
Location: 1246218 - 1246640 (-)
Gene ID: Rep_527_c_0_1072
Type: TC
Location: 1246838 - 1248142 (+)
Type: TC
Location: 1246838 - 1248142 (+)
Gene ID: Rep_527_c_0_1073
Type: pfam
Location: 1248200 - 1248505 (+)
Type: pfam
Location: 1248200 - 1248505 (+)
Gene ID: Rep_527_c_0_1074
Type: pfam
Location: 1248502 - 1249071 (+)
Type: pfam
Location: 1248502 - 1249071 (+)
Gene ID: Rep_527_c_0_1075
Type: CAZyme
Location: 1249108 - 1251084 (+)
Type: CAZyme
Location: 1249108 - 1251084 (+)
Gene ID: Rep_527_c_0_1076
Type: TC
Location: 1251134 - 1252585 (+)
Type: TC
Location: 1251134 - 1252585 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.