Cluster: Rep_527_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_527
- CGC Family ID: CGCFAM_07242
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_527_c_0 | Rep_527_c_0_745 | 848099 | 849787 | + | 3.A.1.120.6 |
| pfam | Rep_527_c_0 | Rep_527_c_0_746 | 850085 | 850666 | + | DUF6621 |
| TF | Rep_527_c_0 | Rep_527_c_0_747 | 850679 | 851575 | + | HTH_1 |
| TC | Rep_527_c_0 | Rep_527_c_0_748 | 851598 | 852866 | - | 2.A.1.25.5 |
| pfam | Rep_527_c_0 | Rep_527_c_0_749 | 852879 | 854189 | - | SpoIID |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_750 | 854195 | 856627 | - | GT2 |
Gene ID: Rep_527_c_0_745
Type: TC
Location: 848099 - 849787 (+)
Type: TC
Location: 848099 - 849787 (+)
Gene ID: Rep_527_c_0_746
Type: pfam
Location: 850085 - 850666 (+)
Type: pfam
Location: 850085 - 850666 (+)
Gene ID: Rep_527_c_0_747
Type: TF
Location: 850679 - 851575 (+)
Type: TF
Location: 850679 - 851575 (+)
Gene ID: Rep_527_c_0_748
Type: TC
Location: 851598 - 852866 (-)
Type: TC
Location: 851598 - 852866 (-)
Gene ID: Rep_527_c_0_749
Type: pfam
Location: 852879 - 854189 (-)
Type: pfam
Location: 852879 - 854189 (-)
Gene ID: Rep_527_c_0_750
Type: CAZyme
Location: 854195 - 856627 (-)
Type: CAZyme
Location: 854195 - 856627 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.