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Cluster: Rep_527_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_527_c_0 Rep_527_c_0_20 20207 22060 + GH13_46
CAZyme Rep_527_c_0 Rep_527_c_0_21 22239 24419 + GH97
TC Rep_527_c_0 Rep_527_c_0_22 24512 27523 + 1.B.14.6.1
pfam Rep_527_c_0 Rep_527_c_0_23 27721 28365 - DDE_Tnp_1
NULL(UNKNOWN) Rep_527_c_0 Rep_527_c_0_24 28582 28779 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_527_c_0 Rep_527_c_0_25 29012 30517 + 8.A.46.1.1
pfam Rep_527_c_0 Rep_527_c_0_26 30538 31701 + SusE | SusF_SusE
pfam Rep_527_c_0 Rep_527_c_0_27 32026 33369 - DDE_Tnp_1 | DUF772 | DDE_Tnp_1_6
TC Rep_527_c_0 Rep_527_c_0_28 33520 34338 - 1.B.42.1.2
TC Rep_527_c_0 Rep_527_c_0_29 34478 35221 + 3.A.1.27.2
TC Rep_527_c_0 Rep_527_c_0_30 35218 35991 + 3.A.1.27.4
Gene ID: Rep_527_c_0_20
Type: CAZyme
Location: 20207 - 22060 (+)
Gene ID: Rep_527_c_0_21
Type: CAZyme
Location: 22239 - 24419 (+)
Gene ID: Rep_527_c_0_22
Type: TC
Location: 24512 - 27523 (+)
Gene ID: Rep_527_c_0_23
Type: pfam
Location: 27721 - 28365 (-)
Gene ID: Rep_527_c_0_24
Type:
Location: 28582 - 28779 (-)
Gene ID: Rep_527_c_0_25
Type: TC
Location: 29012 - 30517 (+)
Gene ID: Rep_527_c_0_26
Type: pfam
Location: 30538 - 31701 (+)
Gene ID: Rep_527_c_0_27
Type: pfam
Location: 32026 - 33369 (-)
Gene ID: Rep_527_c_0_28
Type: TC
Location: 33520 - 34338 (-)
Gene ID: Rep_527_c_0_29
Type: TC
Location: 34478 - 35221 (+)
Gene ID: Rep_527_c_0_30
Type: TC
Location: 35218 - 35991 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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