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Cluster: Rep_523_CGC38

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_523_c_161 Rep_523_c_161_18 19653 21023 - 2.A.6.2.20
TC Rep_523_c_161 Rep_523_c_161_19 21020 24160 - 2.A.6.2.22
TC Rep_523_c_161 Rep_523_c_161_20 24163 25296 - 2.A.6.2.9
TF Rep_523_c_161 Rep_523_c_161_21 25498 26376 + HTH_AraC
pfam Rep_523_c_161 Rep_523_c_161_22 26422 26832 - UPF0047
CAZyme Rep_523_c_161 Rep_523_c_161_23 27148 28293 + GH43_24
TC Rep_523_c_161 Rep_523_c_161_24 28569 29666 - 2.A.98.1.3
Gene ID: Rep_523_c_161_18
Type: TC
Location: 19653 - 21023 (-)
Gene ID: Rep_523_c_161_19
Type: TC
Location: 21020 - 24160 (-)
Gene ID: Rep_523_c_161_20
Type: TC
Location: 24163 - 25296 (-)
Gene ID: Rep_523_c_161_21
Type: TF
Location: 25498 - 26376 (+)
Gene ID: Rep_523_c_161_22
Type: pfam
Location: 26422 - 26832 (-)
Gene ID: Rep_523_c_161_23
Type: CAZyme
Location: 27148 - 28293 (+)
Gene ID: Rep_523_c_161_24
Type: TC
Location: 28569 - 29666 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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