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Cluster: Rep_523_CGC31

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_523_c_113 Rep_523_c_113_2 949 2316 - 1.B.17.3.5
TC Rep_523_c_113 Rep_523_c_113_3 2313 5477 - 2.A.6.2.22
TC Rep_523_c_113 Rep_523_c_113_4 5485 6603 - 2.A.6.2.29
TC Rep_523_c_113 Rep_523_c_113_5 6667 7803 + 9.B.33.1.1
TF Rep_523_c_113 Rep_523_c_113_6 7833 8534 + LytTR
pfam Rep_523_c_113 Rep_523_c_113_7 8657 9259 + RNase_HII
CAZyme Rep_523_c_113 Rep_523_c_113_8 9356 10126 - GH23
Gene ID: Rep_523_c_113_2
Type: TC
Location: 949 - 2316 (-)
Gene ID: Rep_523_c_113_3
Type: TC
Location: 2313 - 5477 (-)
Gene ID: Rep_523_c_113_4
Type: TC
Location: 5485 - 6603 (-)
Gene ID: Rep_523_c_113_5
Type: TC
Location: 6667 - 7803 (+)
Gene ID: Rep_523_c_113_6
Type: TF
Location: 7833 - 8534 (+)
Gene ID: Rep_523_c_113_7
Type: pfam
Location: 8657 - 9259 (+)
Gene ID: Rep_523_c_113_8
Type: CAZyme
Location: 9356 - 10126 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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