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Cluster: Rep_523_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_523_c_8 Rep_523_c_8_10 12833 13801 + 1.A.34.1.3
TF Rep_523_c_8 Rep_523_c_8_11 13816 14163 + MerR
STP Rep_523_c_8 Rep_523_c_8_12 14173 16461 - HD
CAZyme Rep_523_c_8 Rep_523_c_8_13 16569 17837 - GH23
pfam Rep_523_c_8 Rep_523_c_8_14 17843 18643 - DUF5683
pfam Rep_523_c_8 Rep_523_c_8_15 18648 19544 - ParBc | HTH_ParB | ParB_dimer
TC Rep_523_c_8 Rep_523_c_8_16 19642 20406 - 8.A.3.2.3
pfam Rep_523_c_8 Rep_523_c_8_17 20661 21437 + SurE
CAZyme Rep_523_c_8 Rep_523_c_8_18 21434 22576 + GT19
Gene ID: Rep_523_c_8_10
Type: TC
Location: 12833 - 13801 (+)
Gene ID: Rep_523_c_8_11
Type: TF
Location: 13816 - 14163 (+)
Gene ID: Rep_523_c_8_12
Type: STP
Location: 14173 - 16461 (-)
Gene ID: Rep_523_c_8_13
Type: CAZyme
Location: 16569 - 17837 (-)
Gene ID: Rep_523_c_8_14
Type: pfam
Location: 17843 - 18643 (-)
Gene ID: Rep_523_c_8_15
Type: pfam
Location: 18648 - 19544 (-)
Gene ID: Rep_523_c_8_16
Type: TC
Location: 19642 - 20406 (-)
Gene ID: Rep_523_c_8_17
Type: pfam
Location: 20661 - 21437 (+)
Gene ID: Rep_523_c_8_18
Type: CAZyme
Location: 21434 - 22576 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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