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Cluster: Rep_523_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_523_c_67 Rep_523_c_67_1 247 2190 + 3.A.1.120.6
peptidase Rep_523_c_67 Rep_523_c_67_2 2260 4278 + M13.017
pfam Rep_523_c_67 Rep_523_c_67_3 4510 5337 + CMD
CAZyme Rep_523_c_67 Rep_523_c_67_4 5715 7871 + GH133
pfam Rep_523_c_67 Rep_523_c_67_5 8133 9143 - Semialdhyde_dh | Semialdhyde_dhC
TC Rep_523_c_67 Rep_523_c_67_6 9322 11457 + 2.A.37.2.5
pfam Rep_523_c_67 Rep_523_c_67_7 11480 12202 + ThiF
TC Rep_523_c_67 Rep_523_c_67_8 12209 12928 + 3.A.1.125.1
TF Rep_523_c_67 Rep_523_c_67_9 12939 13823 - HTH_AraC
NULL(UNKNOWN) Rep_523_c_67 Rep_523_c_67_10 13906 15546 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_523_c_67 Rep_523_c_67_11 15554 16645 - 8.A.1.1.2
TC Rep_523_c_67 Rep_523_c_67_12 16690 18021 - 2.A.6.2.31
Gene ID: Rep_523_c_67_1
Type: TC
Location: 247 - 2190 (+)
Gene ID: Rep_523_c_67_2
Type: peptidase
Location: 2260 - 4278 (+)
Gene ID: Rep_523_c_67_3
Type: pfam
Location: 4510 - 5337 (+)
Gene ID: Rep_523_c_67_4
Type: CAZyme
Location: 5715 - 7871 (+)
Gene ID: Rep_523_c_67_5
Type: pfam
Location: 8133 - 9143 (-)
Gene ID: Rep_523_c_67_6
Type: TC
Location: 9322 - 11457 (+)
Gene ID: Rep_523_c_67_7
Type: pfam
Location: 11480 - 12202 (+)
Gene ID: Rep_523_c_67_8
Type: TC
Location: 12209 - 12928 (+)
Gene ID: Rep_523_c_67_9
Type: TF
Location: 12939 - 13823 (-)
Gene ID: Rep_523_c_67_10
Type:
Location: 13906 - 15546 (-)
Gene ID: Rep_523_c_67_11
Type: TC
Location: 15554 - 16645 (-)
Gene ID: Rep_523_c_67_12
Type: TC
Location: 16690 - 18021 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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