Cluster: Rep_512_CGC7
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_512
- CGC Family ID: CGCFAM_07243
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_512_c_11 | Rep_512_c_11_2 | 1882 | 3708 | + | 2.A.38.4.3 |
| pfam | Rep_512_c_11 | Rep_512_c_11_3 | 3730 | 4419 | + | TrkA_N | F420_oxidored |
| pfam | Rep_512_c_11 | Rep_512_c_11_4 | 4484 | 5575 | - | YceG |
| CAZyme | Rep_512_c_11 | Rep_512_c_11_5 | 5675 | 7210 | + | GH51_1 |
| sulfatase | Rep_512_c_11 | Rep_512_c_11_6 | 7268 | 8449 | - | S1_7 |
| TC | Rep_512_c_11 | Rep_512_c_11_7 | 8471 | 9076 | - | 3.A.8.1.1 |
| TC | Rep_512_c_11 | Rep_512_c_11_8 | 9420 | 11039 | + | 3.A.1.121.4 |
Gene ID: Rep_512_c_11_2
Type: TC
Location: 1882 - 3708 (+)
Type: TC
Location: 1882 - 3708 (+)
Gene ID: Rep_512_c_11_3
Type: pfam
Location: 3730 - 4419 (+)
Type: pfam
Location: 3730 - 4419 (+)
Gene ID: Rep_512_c_11_4
Type: pfam
Location: 4484 - 5575 (-)
Type: pfam
Location: 4484 - 5575 (-)
Gene ID: Rep_512_c_11_5
Type: CAZyme
Location: 5675 - 7210 (+)
Type: CAZyme
Location: 5675 - 7210 (+)
Gene ID: Rep_512_c_11_6
Type: sulfatase
Location: 7268 - 8449 (-)
Type: sulfatase
Location: 7268 - 8449 (-)
Gene ID: Rep_512_c_11_7
Type: TC
Location: 8471 - 9076 (-)
Type: TC
Location: 8471 - 9076 (-)
Gene ID: Rep_512_c_11_8
Type: TC
Location: 9420 - 11039 (+)
Type: TC
Location: 9420 - 11039 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.