Cluster: Rep_512_CGC54
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_512
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_512_c_175 | Rep_512_c_175_22 | 26505 | 27617 | + | 2.A.6.2.6 |
| TC | Rep_512_c_175 | Rep_512_c_175_23 | 27630 | 30767 | + | 2.A.6.2.22 |
| TC | Rep_512_c_175 | Rep_512_c_175_24 | 30783 | 32156 | + | 2.A.6.2.23 |
| CAZyme | Rep_512_c_175 | Rep_512_c_175_25 | 32261 | 34711 | - | GH31_4 |
| TF | Rep_512_c_175 | Rep_512_c_175_26 | 34939 | 37887 | - | HTH_AraC |
| TF | Rep_512_c_175 | Rep_512_c_175_27 | 37887 | 38777 | - | HTH_AraC | HTH_AraC |
| TC | Rep_512_c_175 | Rep_512_c_175_28 | 39067 | 42345 | + | 1.B.14.6.1 |
| pfam | Rep_512_c_175 | Rep_512_c_175_29 | 42357 | 44174 | + | SusD_RagB |
| pfam | Rep_512_c_175 | Rep_512_c_175_30 | 44207 | 44554 | + | Flg_new |
| CAZyme | Rep_512_c_175 | Rep_512_c_175_31 | 44636 | 46048 | + | GH173 |
| pfam | Rep_512_c_175 | Rep_512_c_175_32 | 46133 | 48277 | + | Glyco_hydro_42M | GLMA_2nd |
| CAZyme | Rep_512_c_175 | Rep_512_c_175_33 | 48284 | 50881 | + | GH2 |
| sulfatase | Rep_512_c_175 | Rep_512_c_175_34 | 50868 | 52430 | + | S1_34 |
| pfam | Rep_512_c_175 | Rep_512_c_175_35 | 52443 | 54518 | + | Glyco_hydro_42M |
| CAZyme | Rep_512_c_175 | Rep_512_c_175_36 | 54521 | 56320 | + | GH10 |
| CAZyme | Rep_512_c_175 | Rep_512_c_175_37 | 56341 | 58989 | + | CBM67 | GH78 |
| CAZyme | Rep_512_c_175 | Rep_512_c_175_38 | 58989 | 61277 | + | GH3 |
Gene ID: Rep_512_c_175_22
Type: TC
Location: 26505 - 27617 (+)
Type: TC
Location: 26505 - 27617 (+)
Gene ID: Rep_512_c_175_23
Type: TC
Location: 27630 - 30767 (+)
Type: TC
Location: 27630 - 30767 (+)
Gene ID: Rep_512_c_175_24
Type: TC
Location: 30783 - 32156 (+)
Type: TC
Location: 30783 - 32156 (+)
Gene ID: Rep_512_c_175_25
Type: CAZyme
Location: 32261 - 34711 (-)
Type: CAZyme
Location: 32261 - 34711 (-)
Gene ID: Rep_512_c_175_26
Type: TF
Location: 34939 - 37887 (-)
Type: TF
Location: 34939 - 37887 (-)
Gene ID: Rep_512_c_175_27
Type: TF
Location: 37887 - 38777 (-)
Type: TF
Location: 37887 - 38777 (-)
Gene ID: Rep_512_c_175_28
Type: TC
Location: 39067 - 42345 (+)
Type: TC
Location: 39067 - 42345 (+)
Gene ID: Rep_512_c_175_29
Type: pfam
Location: 42357 - 44174 (+)
Type: pfam
Location: 42357 - 44174 (+)
Gene ID: Rep_512_c_175_30
Type: pfam
Location: 44207 - 44554 (+)
Type: pfam
Location: 44207 - 44554 (+)
Gene ID: Rep_512_c_175_31
Type: CAZyme
Location: 44636 - 46048 (+)
Type: CAZyme
Location: 44636 - 46048 (+)
Gene ID: Rep_512_c_175_32
Type: pfam
Location: 46133 - 48277 (+)
Type: pfam
Location: 46133 - 48277 (+)
Gene ID: Rep_512_c_175_33
Type: CAZyme
Location: 48284 - 50881 (+)
Type: CAZyme
Location: 48284 - 50881 (+)
Gene ID: Rep_512_c_175_34
Type: sulfatase
Location: 50868 - 52430 (+)
Type: sulfatase
Location: 50868 - 52430 (+)
Gene ID: Rep_512_c_175_35
Type: pfam
Location: 52443 - 54518 (+)
Type: pfam
Location: 52443 - 54518 (+)
Gene ID: Rep_512_c_175_36
Type: CAZyme
Location: 54521 - 56320 (+)
Type: CAZyme
Location: 54521 - 56320 (+)
Gene ID: Rep_512_c_175_37
Type: CAZyme
Location: 56341 - 58989 (+)
Type: CAZyme
Location: 56341 - 58989 (+)
Gene ID: Rep_512_c_175_38
Type: CAZyme
Location: 58989 - 61277 (+)
Type: CAZyme
Location: 58989 - 61277 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.