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Cluster: Rep_512_CGC53

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_512_c_168 Rep_512_c_168_9 6336 8261 + PL33_1
NULL(UNKNOWN) Rep_512_c_168 Rep_512_c_168_10 8506 9585 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_512_c_168 Rep_512_c_168_11 9655 10704 + 3.A.1.7.1
TC Rep_512_c_168 Rep_512_c_168_12 10797 11654 + 3.A.1.7.1
TC Rep_512_c_168 Rep_512_c_168_13 11676 12548 + 3.A.1.7.1
TC Rep_512_c_168 Rep_512_c_168_14 12536 13306 + 3.A.1.7.2
pfam Rep_512_c_168 Rep_512_c_168_15 13607 16927 + TMEM260-like
CAZyme Rep_512_c_168 Rep_512_c_168_16 17009 17623 + CE4
Gene ID: Rep_512_c_168_9
Type: CAZyme
Location: 6336 - 8261 (+)
Gene ID: Rep_512_c_168_10
Type:
Location: 8506 - 9585 (+)
Gene ID: Rep_512_c_168_11
Type: TC
Location: 9655 - 10704 (+)
Gene ID: Rep_512_c_168_12
Type: TC
Location: 10797 - 11654 (+)
Gene ID: Rep_512_c_168_13
Type: TC
Location: 11676 - 12548 (+)
Gene ID: Rep_512_c_168_14
Type: TC
Location: 12536 - 13306 (+)
Gene ID: Rep_512_c_168_15
Type: pfam
Location: 13607 - 16927 (+)
Gene ID: Rep_512_c_168_16
Type: CAZyme
Location: 17009 - 17623 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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