Cluster: Rep_512_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_512
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_512_c_5 | Rep_512_c_5_29 | 32798 | 34351 | + | 3.B.1.1.2 |
| pfam | Rep_512_c_5 | Rep_512_c_5_30 | 34378 | 35307 | + | LTD | OAD_gamma |
| pfam | Rep_512_c_5 | Rep_512_c_5_31 | 35327 | 35755 | + | Biotin_lipoyl | Biotin_lipoyl_2 |
| TC | Rep_512_c_5 | Rep_512_c_5_32 | 35757 | 36917 | + | 3.B.1.1.2 |
| pfam | Rep_512_c_5 | Rep_512_c_5_33 | 37090 | 37341 | + | Cyc-maltodext_C |
| CAZyme | Rep_512_c_5 | Rep_512_c_5_34 | 37427 | 38257 | - | CE1 |
| TC | Rep_512_c_5 | Rep_512_c_5_35 | 38374 | 39555 | + | 2.A.1.36.3 |
Gene ID: Rep_512_c_5_29
Type: TC
Location: 32798 - 34351 (+)
Type: TC
Location: 32798 - 34351 (+)
Gene ID: Rep_512_c_5_30
Type: pfam
Location: 34378 - 35307 (+)
Type: pfam
Location: 34378 - 35307 (+)
Gene ID: Rep_512_c_5_31
Type: pfam
Location: 35327 - 35755 (+)
Type: pfam
Location: 35327 - 35755 (+)
Gene ID: Rep_512_c_5_32
Type: TC
Location: 35757 - 36917 (+)
Type: TC
Location: 35757 - 36917 (+)
Gene ID: Rep_512_c_5_33
Type: pfam
Location: 37090 - 37341 (+)
Type: pfam
Location: 37090 - 37341 (+)
Gene ID: Rep_512_c_5_34
Type: CAZyme
Location: 37427 - 38257 (-)
Type: CAZyme
Location: 37427 - 38257 (-)
Gene ID: Rep_512_c_5_35
Type: TC
Location: 38374 - 39555 (+)
Type: TC
Location: 38374 - 39555 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.