Cluster: Rep_512_CGC35
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_512
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_512_c_94 | Rep_512_c_94_33 | 52664 | 55624 | + | 1.B.14.6.1 |
| TC | Rep_512_c_94 | Rep_512_c_94_34 | 55643 | 57220 | + | 8.A.46.1.1 |
| pfam | Rep_512_c_94 | Rep_512_c_94_35 | 57316 | 59076 | + | SusE | DUF5111 | DUF5114 |
| CAZyme | Rep_512_c_94 | Rep_512_c_94_36 | 59090 | 60169 | + | GH53 |
| CAZyme | Rep_512_c_94 | Rep_512_c_94_37 | 60442 | 63960 | + | GH2 | GH53 |
| TF | Rep_512_c_94 | Rep_512_c_94_38 | 64026 | 64937 | - | HTH_AraC |
| pfam | Rep_512_c_94 | Rep_512_c_94_39 | 65113 | 66186 | + | HlyD_3 | Biotin_lipoyl_2 | HlyD_D23 |
| TC | Rep_512_c_94 | Rep_512_c_94_40 | 66183 | 69323 | + | 2.A.6.2.38 |
| pfam | Rep_512_c_94 | Rep_512_c_94_41 | 69501 | 70850 | + | OEP | OEP |
| pfam | Rep_512_c_94 | Rep_512_c_94_42 | 71037 | 72098 | - | DUF3810 |
| TC | Rep_512_c_94 | Rep_512_c_94_43 | 72313 | 73545 | + | 9.B.156.3.1 |
| pfam | Rep_512_c_94 | Rep_512_c_94_44 | 73657 | 74079 | + | YbeY |
| TC | Rep_512_c_94 | Rep_512_c_94_45 | 74200 | 76071 | + | 1.C.39.4.5 |
Gene ID: Rep_512_c_94_33
Type: TC
Location: 52664 - 55624 (+)
Type: TC
Location: 52664 - 55624 (+)
Gene ID: Rep_512_c_94_34
Type: TC
Location: 55643 - 57220 (+)
Type: TC
Location: 55643 - 57220 (+)
Gene ID: Rep_512_c_94_35
Type: pfam
Location: 57316 - 59076 (+)
Type: pfam
Location: 57316 - 59076 (+)
Gene ID: Rep_512_c_94_36
Type: CAZyme
Location: 59090 - 60169 (+)
Type: CAZyme
Location: 59090 - 60169 (+)
Gene ID: Rep_512_c_94_37
Type: CAZyme
Location: 60442 - 63960 (+)
Type: CAZyme
Location: 60442 - 63960 (+)
Gene ID: Rep_512_c_94_38
Type: TF
Location: 64026 - 64937 (-)
Type: TF
Location: 64026 - 64937 (-)
Gene ID: Rep_512_c_94_39
Type: pfam
Location: 65113 - 66186 (+)
Type: pfam
Location: 65113 - 66186 (+)
Gene ID: Rep_512_c_94_40
Type: TC
Location: 66183 - 69323 (+)
Type: TC
Location: 66183 - 69323 (+)
Gene ID: Rep_512_c_94_41
Type: pfam
Location: 69501 - 70850 (+)
Type: pfam
Location: 69501 - 70850 (+)
Gene ID: Rep_512_c_94_42
Type: pfam
Location: 71037 - 72098 (-)
Type: pfam
Location: 71037 - 72098 (-)
Gene ID: Rep_512_c_94_43
Type: TC
Location: 72313 - 73545 (+)
Type: TC
Location: 72313 - 73545 (+)
Gene ID: Rep_512_c_94_44
Type: pfam
Location: 73657 - 74079 (+)
Type: pfam
Location: 73657 - 74079 (+)
Gene ID: Rep_512_c_94_45
Type: TC
Location: 74200 - 76071 (+)
Type: TC
Location: 74200 - 76071 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.