Cluster: Rep_509_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_509
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_509_c_4 | Rep_509_c_4_13 | 12842 | 14143 | + | CE7 |
| TC | Rep_509_c_4 | Rep_509_c_4_14 | 14249 | 15715 | - | 2.A.1.14.7 |
| pfam | Rep_509_c_4 | Rep_509_c_4_15 | 15758 | 16714 | - | KduI |
| TC | Rep_509_c_4 | Rep_509_c_4_16 | 16764 | 18143 | - | 4.A.5.1.2 |
| CAZyme | Rep_509_c_4 | Rep_509_c_4_17 | 18397 | 20502 | + | CE8 | GH105 |
| CAZyme | Rep_509_c_4 | Rep_509_c_4_18 | 20783 | 21709 | - | CBM50 |
Gene ID: Rep_509_c_4_13
Type: CAZyme
Location: 12842 - 14143 (+)
Type: CAZyme
Location: 12842 - 14143 (+)
Gene ID: Rep_509_c_4_14
Type: TC
Location: 14249 - 15715 (-)
Type: TC
Location: 14249 - 15715 (-)
Gene ID: Rep_509_c_4_15
Type: pfam
Location: 15758 - 16714 (-)
Type: pfam
Location: 15758 - 16714 (-)
Gene ID: Rep_509_c_4_16
Type: TC
Location: 16764 - 18143 (-)
Type: TC
Location: 16764 - 18143 (-)
Gene ID: Rep_509_c_4_17
Type: CAZyme
Location: 18397 - 20502 (+)
Type: CAZyme
Location: 18397 - 20502 (+)
Gene ID: Rep_509_c_4_18
Type: CAZyme
Location: 20783 - 21709 (-)
Type: CAZyme
Location: 20783 - 21709 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp900546355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.