Cluster: Rep_509_CGC33
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate: pectin/alpha-glucan
- Genome ID: Rep_509
- CGC Family ID: CGCFAM_00025
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_509_c_82 | Rep_509_c_82_2 | 1882 | 3738 | + | GH13_46 |
| CAZyme | Rep_509_c_82 | Rep_509_c_82_3 | 3988 | 6171 | + | GH97 |
| TC | Rep_509_c_82 | Rep_509_c_82_4 | 6442 | 7017 | + | 1.B.14.6.1 |
| TC | Rep_509_c_82 | Rep_509_c_82_5 | 7046 | 9532 | + | 1.B.14.6.1 |
| TC | Rep_509_c_82 | Rep_509_c_82_6 | 9548 | 11167 | + | 8.A.46.1.1 |
| pfam | Rep_509_c_82 | Rep_509_c_82_7 | 11199 | 12314 | + | SusE |
| TC | Rep_509_c_82 | Rep_509_c_82_8 | 12861 | 14393 | - | 2.A.17.1.6 |
Gene ID: Rep_509_c_82_2
Type: CAZyme
Location: 1882 - 3738 (+)
Type: CAZyme
Location: 1882 - 3738 (+)
Gene ID: Rep_509_c_82_3
Type: CAZyme
Location: 3988 - 6171 (+)
Type: CAZyme
Location: 3988 - 6171 (+)
Gene ID: Rep_509_c_82_4
Type: TC
Location: 6442 - 7017 (+)
Type: TC
Location: 6442 - 7017 (+)
Gene ID: Rep_509_c_82_5
Type: TC
Location: 7046 - 9532 (+)
Type: TC
Location: 7046 - 9532 (+)
Gene ID: Rep_509_c_82_6
Type: TC
Location: 9548 - 11167 (+)
Type: TC
Location: 9548 - 11167 (+)
Gene ID: Rep_509_c_82_7
Type: pfam
Location: 11199 - 12314 (+)
Type: pfam
Location: 11199 - 12314 (+)
Gene ID: Rep_509_c_82_8
Type: TC
Location: 12861 - 14393 (-)
Type: TC
Location: 12861 - 14393 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp900546355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.