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Cluster: Rep_509_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_509_c_2 Rep_509_c_2_45 47311 47547 - 3.D.1.6.4
pfam Rep_509_c_2 Rep_509_c_2_46 47701 48270 + Formyl_trans_N
pfam Rep_509_c_2 Rep_509_c_2_47 48417 49022 + DUF4254
CAZyme Rep_509_c_2 Rep_509_c_2_48 49033 50055 + GT9
TC Rep_509_c_2 Rep_509_c_2_49 50044 51882 - 3.A.1.135.5
pfam Rep_509_c_2 Rep_509_c_2_50 51970 52881 + Lip_A_acyltrans
CAZyme Rep_509_c_2 Rep_509_c_2_51 53005 53745 - GT2
CAZyme Rep_509_c_2 Rep_509_c_2_52 53770 54507 - GT32
pfam Rep_509_c_2 Rep_509_c_2_53 54515 55267 - Kdo
CAZyme Rep_509_c_2 Rep_509_c_2_54 55264 56427 - GT4
CAZyme Rep_509_c_2 Rep_509_c_2_55 56870 57892 + GT113
CAZyme Rep_509_c_2 Rep_509_c_2_56 57853 58779 - GT2
CAZyme Rep_509_c_2 Rep_509_c_2_57 58941 60635 + GT83
Gene ID: Rep_509_c_2_45
Type: TC
Location: 47311 - 47547 (-)
Gene ID: Rep_509_c_2_46
Type: pfam
Location: 47701 - 48270 (+)
Gene ID: Rep_509_c_2_47
Type: pfam
Location: 48417 - 49022 (+)
Gene ID: Rep_509_c_2_48
Type: CAZyme
Location: 49033 - 50055 (+)
Gene ID: Rep_509_c_2_49
Type: TC
Location: 50044 - 51882 (-)
Gene ID: Rep_509_c_2_50
Type: pfam
Location: 51970 - 52881 (+)
Gene ID: Rep_509_c_2_51
Type: CAZyme
Location: 53005 - 53745 (-)
Gene ID: Rep_509_c_2_52
Type: CAZyme
Location: 53770 - 54507 (-)
Gene ID: Rep_509_c_2_53
Type: pfam
Location: 54515 - 55267 (-)
Gene ID: Rep_509_c_2_54
Type: CAZyme
Location: 55264 - 56427 (-)
Gene ID: Rep_509_c_2_55
Type: CAZyme
Location: 56870 - 57892 (+)
Gene ID: Rep_509_c_2_56
Type: CAZyme
Location: 57853 - 58779 (-)
Gene ID: Rep_509_c_2_57
Type: CAZyme
Location: 58941 - 60635 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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