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Cluster: Rep_509_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_509_c_22 Rep_509_c_22_3 3399 6608 + 1.B.14.6.2
TC Rep_509_c_22 Rep_509_c_22_4 6626 8143 + 8.A.46.2.2
pfam Rep_509_c_22 Rep_509_c_22_5 8168 10039 + Alk_phosphatase | Alk_phosphatase | Phosphodiest | GDPD_2
CAZyme Rep_509_c_22 Rep_509_c_22_6 10256 12214 - GH5_21
pfam Rep_509_c_22 Rep_509_c_22_7 12283 13467 - DUF4934 | DUF5128
CAZyme Rep_509_c_22 Rep_509_c_22_8 14063 16246 - GH10
pfam Rep_509_c_22 Rep_509_c_22_9 16269 17276 - BT_3987-like_N | DUF5627
pfam Rep_509_c_22 Rep_509_c_22_10 17328 19103 - SusD_RagB | SusD-like_3
TC Rep_509_c_22 Rep_509_c_22_11 19131 21947 - 1.B.14.6.1
pfam Rep_509_c_22 Rep_509_c_22_12 22017 23912 - SusD_RagB | SusD-like_3
TC Rep_509_c_22 Rep_509_c_22_13 23925 27035 - 1.B.14.6.1
Gene ID: Rep_509_c_22_3
Type: TC
Location: 3399 - 6608 (+)
Gene ID: Rep_509_c_22_4
Type: TC
Location: 6626 - 8143 (+)
Gene ID: Rep_509_c_22_5
Type: pfam
Location: 8168 - 10039 (+)
Gene ID: Rep_509_c_22_6
Type: CAZyme
Location: 10256 - 12214 (-)
Gene ID: Rep_509_c_22_7
Type: pfam
Location: 12283 - 13467 (-)
Gene ID: Rep_509_c_22_8
Type: CAZyme
Location: 14063 - 16246 (-)
Gene ID: Rep_509_c_22_9
Type: pfam
Location: 16269 - 17276 (-)
Gene ID: Rep_509_c_22_10
Type: pfam
Location: 17328 - 19103 (-)
Gene ID: Rep_509_c_22_11
Type: TC
Location: 19131 - 21947 (-)
Gene ID: Rep_509_c_22_12
Type: pfam
Location: 22017 - 23912 (-)
Gene ID: Rep_509_c_22_13
Type: TC
Location: 23925 - 27035 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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