Cluster: Rep_509_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_509
- CGC Family ID: CGCFAM_00445
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_509_c_20 | Rep_509_c_20_24 | 28721 | 29884 | - | 2.A.1.7.17 |
| CAZyme | Rep_509_c_20 | Rep_509_c_20_25 | 29895 | 32090 | - | GH36 |
| CAZyme | Rep_509_c_20 | Rep_509_c_20_26 | 32231 | 34096 | - | GH32 |
| NULL(UNKNOWN) | Rep_509_c_20 | Rep_509_c_20_27 | 34128 | 36473 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_509_c_20 | Rep_509_c_20_28 | 36858 | 38651 | - | 3.A.24.1.1 |
Gene ID: Rep_509_c_20_24
Type: TC
Location: 28721 - 29884 (-)
Type: TC
Location: 28721 - 29884 (-)
Gene ID: Rep_509_c_20_25
Type: CAZyme
Location: 29895 - 32090 (-)
Type: CAZyme
Location: 29895 - 32090 (-)
Gene ID: Rep_509_c_20_26
Type: CAZyme
Location: 32231 - 34096 (-)
Type: CAZyme
Location: 32231 - 34096 (-)
Gene ID: Rep_509_c_20_27
Type:
Location: 34128 - 36473 (-)
Type:
Location: 34128 - 36473 (-)
Gene ID: Rep_509_c_20_28
Type: TC
Location: 36858 - 38651 (-)
Type: TC
Location: 36858 - 38651 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp900546355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_509_c_20_24 | vegetarian > omnivore | 1.13313 | 0.02258 |