Cluster: Rep_506_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_506
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_506_c_3 | Rep_506_c_3_61 | 86723 | 87691 | + | 1.A.34.1.3 |
| TF | Rep_506_c_3 | Rep_506_c_3_62 | 87707 | 88054 | + | MerR |
| STP | Rep_506_c_3 | Rep_506_c_3_63 | 88064 | 90334 | - | HD |
| CAZyme | Rep_506_c_3 | Rep_506_c_3_64 | 90416 | 91654 | - | GH23 |
Gene ID: Rep_506_c_3_61
Type: TC
Location: 86723 - 87691 (+)
Type: TC
Location: 86723 - 87691 (+)
Gene ID: Rep_506_c_3_62
Type: TF
Location: 87707 - 88054 (+)
Type: TF
Location: 87707 - 88054 (+)
Gene ID: Rep_506_c_3_63
Type: STP
Location: 88064 - 90334 (-)
Type: STP
Location: 88064 - 90334 (-)
Gene ID: Rep_506_c_3_64
Type: CAZyme
Location: 90416 - 91654 (-)
Type: CAZyme
Location: 90416 - 91654 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.