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Cluster: Rep_506_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_506_c_1 Rep_506_c_1_64 79148 81451 + 1.B.14.1.4
pfam Rep_506_c_1 Rep_506_c_1_65 81542 81985 - PepSY_like | PepSY_like
pfam Rep_506_c_1 Rep_506_c_1_66 82199 83743 - Acetyltransf_1 | CN_hydrolase
TC Rep_506_c_1 Rep_506_c_1_67 83836 85287 - 3.A.1.130.1
CAZyme Rep_506_c_1 Rep_506_c_1_68 85318 87294 - GH13_14
pfam Rep_506_c_1 Rep_506_c_1_69 87405 87974 - RuvC
pfam Rep_506_c_1 Rep_506_c_1_70 87971 88276 - DUF4286
TC Rep_506_c_1 Rep_506_c_1_71 88496 90160 + 4.C.1.1.7
pfam Rep_506_c_1 Rep_506_c_1_72 90319 93528 + UvrD-helicase | UvrD_C | UvrD_C
pfam Rep_506_c_1 Rep_506_c_1_73 93562 96435 + PDDEXK_1
TC Rep_506_c_1 Rep_506_c_1_74 96714 98918 + 3.A.10.1.10
Gene ID: Rep_506_c_1_64
Type: TC
Location: 79148 - 81451 (+)
Gene ID: Rep_506_c_1_65
Type: pfam
Location: 81542 - 81985 (-)
Gene ID: Rep_506_c_1_66
Type: pfam
Location: 82199 - 83743 (-)
Gene ID: Rep_506_c_1_67
Type: TC
Location: 83836 - 85287 (-)
Gene ID: Rep_506_c_1_68
Type: CAZyme
Location: 85318 - 87294 (-)
Gene ID: Rep_506_c_1_69
Type: pfam
Location: 87405 - 87974 (-)
Gene ID: Rep_506_c_1_70
Type: pfam
Location: 87971 - 88276 (-)
Gene ID: Rep_506_c_1_71
Type: TC
Location: 88496 - 90160 (+)
Gene ID: Rep_506_c_1_72
Type: pfam
Location: 90319 - 93528 (+)
Gene ID: Rep_506_c_1_73
Type: pfam
Location: 93562 - 96435 (+)
Gene ID: Rep_506_c_1_74
Type: TC
Location: 96714 - 98918 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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