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Cluster: Rep_506_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_506_c_16 Rep_506_c_16_24 25529 28006 - GH31_4
CAZyme Rep_506_c_16 Rep_506_c_16_25 28032 30488 - GH31_4
TC Rep_506_c_16 Rep_506_c_16_26 30655 32277 - 8.A.46.1.1
TC Rep_506_c_16 Rep_506_c_16_27 32298 35324 - 1.B.14.6.1
TF Rep_506_c_16 Rep_506_c_16_28 35464 38277 - HTH_AraC
TC Rep_506_c_16 Rep_506_c_16_29 38493 39857 + 2.A.66.1.33
pfam Rep_506_c_16 Rep_506_c_16_30 40128 41630 + GHL10
TC Rep_506_c_16 Rep_506_c_16_31 41767 42447 + 1.B.44.2.11
Gene ID: Rep_506_c_16_24
Type: CAZyme
Location: 25529 - 28006 (-)
Gene ID: Rep_506_c_16_25
Type: CAZyme
Location: 28032 - 30488 (-)
Gene ID: Rep_506_c_16_26
Type: TC
Location: 30655 - 32277 (-)
Gene ID: Rep_506_c_16_27
Type: TC
Location: 32298 - 35324 (-)
Gene ID: Rep_506_c_16_28
Type: TF
Location: 35464 - 38277 (-)
Gene ID: Rep_506_c_16_29
Type: TC
Location: 38493 - 39857 (+)
Gene ID: Rep_506_c_16_30
Type: pfam
Location: 40128 - 41630 (+)
Gene ID: Rep_506_c_16_31
Type: TC
Location: 41767 - 42447 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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