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Cluster: Rep_505_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_505_c_0 Rep_505_c_0_172 233101 234936 - PL35
CAZyme Rep_505_c_0 Rep_505_c_0_173 234956 237028 - GH2
CAZyme Rep_505_c_0 Rep_505_c_0_174 237064 240267 - GH92
pfam Rep_505_c_0 Rep_505_c_0_175 240803 241252 + Cupin_2
CAZyme Rep_505_c_0 Rep_505_c_0_176 241362 243563 - GH36
TF Rep_505_c_0 Rep_505_c_0_177 243723 244613 + HTH_AraC | HTH_AraC
CAZyme Rep_505_c_0 Rep_505_c_0_178 245015 246139 + GH26
CAZyme Rep_505_c_0 Rep_505_c_0_179 246136 247314 + GH130_1
TC Rep_505_c_0 Rep_505_c_0_180 247338 248729 + 2.A.2.3.6
pfam Rep_505_c_0 Rep_505_c_0_181 248722 249915 + GlcNAc_2-epim
TC Rep_505_c_0 Rep_505_c_0_182 250170 253442 + 1.B.14.6.1
Gene ID: Rep_505_c_0_172
Type: CAZyme
Location: 233101 - 234936 (-)
Gene ID: Rep_505_c_0_173
Type: CAZyme
Location: 234956 - 237028 (-)
Gene ID: Rep_505_c_0_174
Type: CAZyme
Location: 237064 - 240267 (-)
Gene ID: Rep_505_c_0_175
Type: pfam
Location: 240803 - 241252 (+)
Gene ID: Rep_505_c_0_176
Type: CAZyme
Location: 241362 - 243563 (-)
Gene ID: Rep_505_c_0_177
Type: TF
Location: 243723 - 244613 (+)
Gene ID: Rep_505_c_0_178
Type: CAZyme
Location: 245015 - 246139 (+)
Gene ID: Rep_505_c_0_179
Type: CAZyme
Location: 246136 - 247314 (+)
Gene ID: Rep_505_c_0_180
Type: TC
Location: 247338 - 248729 (+)
Gene ID: Rep_505_c_0_181
Type: pfam
Location: 248722 - 249915 (+)
Gene ID: Rep_505_c_0_182
Type: TC
Location: 250170 - 253442 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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