Cluster: Rep_505_CGC35
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_505
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_505_c_13 | Rep_505_c_13_16 | 13636 | 17136 | + | 1.B.14.6.1 |
| pfam | Rep_505_c_13 | Rep_505_c_13_17 | 17160 | 19139 | + | SusD_RagB | SusD-like_3 |
| sulfatase | Rep_505_c_13 | Rep_505_c_13_18 | 19516 | 20952 | + | S1_20 |
| CAZyme | Rep_505_c_13 | Rep_505_c_13_19 | 21035 | 24370 | + | GH2 |
| pfam | Rep_505_c_13 | Rep_505_c_13_20 | 24457 | 26604 | - | S1 | RNB | OB_RNB | OB_RNB | OB_Dis3 | CSD2 | CSD2 |
| TC | Rep_505_c_13 | Rep_505_c_13_21 | 26687 | 27646 | + | 2.A.4.7.9 |
| pfam | Rep_505_c_13 | Rep_505_c_13_22 | 27639 | 28649 | + | adh_short | 3Beta_HSD | Epimerase | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd |
| pfam | Rep_505_c_13 | Rep_505_c_13_23 | 28640 | 29617 | + | PAP2 | PAP2_3 |
| CAZyme | Rep_505_c_13 | Rep_505_c_13_24 | 29702 | 32104 | - | PL30 |
| NULL(UNKNOWN) | Rep_505_c_13 | Rep_505_c_13_25 | 32214 | 32411 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_505_c_13 | Rep_505_c_13_26 | 32540 | 33667 | + | GH117 | GH117 |
| pfam | Rep_505_c_13 | Rep_505_c_13_27 | 33780 | 35174 | + | Gal_mutarotas_2 | DUF5110 | Glyco_hydro_31_3rd |
| CAZyme | Rep_505_c_13 | Rep_505_c_13_28 | 35180 | 37492 | + | GH92 |
| CAZyme | Rep_505_c_13 | Rep_505_c_13_29 | 37560 | 39581 | + | PL8 |
Gene ID: Rep_505_c_13_16
Type: TC
Location: 13636 - 17136 (+)
Type: TC
Location: 13636 - 17136 (+)
Gene ID: Rep_505_c_13_17
Type: pfam
Location: 17160 - 19139 (+)
Type: pfam
Location: 17160 - 19139 (+)
Gene ID: Rep_505_c_13_18
Type: sulfatase
Location: 19516 - 20952 (+)
Type: sulfatase
Location: 19516 - 20952 (+)
Gene ID: Rep_505_c_13_19
Type: CAZyme
Location: 21035 - 24370 (+)
Type: CAZyme
Location: 21035 - 24370 (+)
Gene ID: Rep_505_c_13_20
Type: pfam
Location: 24457 - 26604 (-)
Type: pfam
Location: 24457 - 26604 (-)
Gene ID: Rep_505_c_13_21
Type: TC
Location: 26687 - 27646 (+)
Type: TC
Location: 26687 - 27646 (+)
Gene ID: Rep_505_c_13_22
Type: pfam
Location: 27639 - 28649 (+)
Type: pfam
Location: 27639 - 28649 (+)
Gene ID: Rep_505_c_13_23
Type: pfam
Location: 28640 - 29617 (+)
Type: pfam
Location: 28640 - 29617 (+)
Gene ID: Rep_505_c_13_24
Type: CAZyme
Location: 29702 - 32104 (-)
Type: CAZyme
Location: 29702 - 32104 (-)
Gene ID: Rep_505_c_13_25
Type:
Location: 32214 - 32411 (+)
Type:
Location: 32214 - 32411 (+)
Gene ID: Rep_505_c_13_26
Type: CAZyme
Location: 32540 - 33667 (+)
Type: CAZyme
Location: 32540 - 33667 (+)
Gene ID: Rep_505_c_13_27
Type: pfam
Location: 33780 - 35174 (+)
Type: pfam
Location: 33780 - 35174 (+)
Gene ID: Rep_505_c_13_28
Type: CAZyme
Location: 35180 - 37492 (+)
Type: CAZyme
Location: 35180 - 37492 (+)
Gene ID: Rep_505_c_13_29
Type: CAZyme
Location: 37560 - 39581 (+)
Type: CAZyme
Location: 37560 - 39581 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola excrementipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.