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Cluster: Rep_505_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_505_c_8 Rep_505_c_8_66 89710 92832 + 1.B.14.6.1
pfam Rep_505_c_8 Rep_505_c_8_67 92844 94745 + SusD_RagB | SusD-like_3
TC Rep_505_c_8 Rep_505_c_8_68 94778 97795 + 1.B.14.6.1
pfam Rep_505_c_8 Rep_505_c_8_69 97821 99509 + SusD_RagB | SusD-like_3
CAZyme Rep_505_c_8 Rep_505_c_8_70 99549 100439 + CBM32
CAZyme Rep_505_c_8 Rep_505_c_8_71 100455 101885 + GH16_3
NULL(UNKNOWN) Rep_505_c_8 Rep_505_c_8_72 102033 102458 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_505_c_8 Rep_505_c_8_73 102494 103327 + GH16_3
CAZyme Rep_505_c_8 Rep_505_c_8_74 103490 105568 + GH43_17 | GH43_24
Gene ID: Rep_505_c_8_66
Type: TC
Location: 89710 - 92832 (+)
Gene ID: Rep_505_c_8_67
Type: pfam
Location: 92844 - 94745 (+)
Gene ID: Rep_505_c_8_68
Type: TC
Location: 94778 - 97795 (+)
Gene ID: Rep_505_c_8_69
Type: pfam
Location: 97821 - 99509 (+)
Gene ID: Rep_505_c_8_70
Type: CAZyme
Location: 99549 - 100439 (+)
Gene ID: Rep_505_c_8_71
Type: CAZyme
Location: 100455 - 101885 (+)
Gene ID: Rep_505_c_8_72
Type:
Location: 102033 - 102458 (+)
Gene ID: Rep_505_c_8_73
Type: CAZyme
Location: 102494 - 103327 (+)
Gene ID: Rep_505_c_8_74
Type: CAZyme
Location: 103490 - 105568 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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