Cluster: Rep_505_CGC26
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 5
- Substrate: pectin/host glycan
- Genome ID: Rep_505
- CGC Family ID: CGCFAM_00110
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_505_c_7 | Rep_505_c_7_19 | 19588 | 20304 | + | 9.B.186.1.3 |
| TC | Rep_505_c_7 | Rep_505_c_7_20 | 20374 | 21012 | - | 1.A.62.2.1 |
| sulfatase | Rep_505_c_7 | Rep_505_c_7_21 | 21322 | 22890 | + | S1_11 |
| TF | Rep_505_c_7 | Rep_505_c_7_22 | 23075 | 27022 | - | HTH_AraC |
| TC | Rep_505_c_7 | Rep_505_c_7_23 | 27291 | 30620 | + | 1.B.14.6.1 |
| pfam | Rep_505_c_7 | Rep_505_c_7_24 | 30632 | 32479 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_505_c_7 | Rep_505_c_7_25 | 32526 | 34439 | + | GH16_3 |
| CAZyme | Rep_505_c_7 | Rep_505_c_7_26 | 34517 | 36850 | + | GH20 |
| NULL(UNKNOWN) | Rep_505_c_7 | Rep_505_c_7_27 | 36874 | 39114 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_505_c_7 | Rep_505_c_7_28 | 39559 | 43149 | - | GH2 |
| CAZyme | Rep_505_c_7 | Rep_505_c_7_29 | 43161 | 44981 | - | GH29 |
| CAZyme | Rep_505_c_7 | Rep_505_c_7_30 | 44987 | 46615 | - | GH18 |
| NULL(UNKNOWN) | Rep_505_c_7 | Rep_505_c_7_31 | 46776 | 46868 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| sulfatase | Rep_505_c_7 | Rep_505_c_7_32 | 46865 | 48436 | + | S1_16 |
| TC | Rep_505_c_7 | Rep_505_c_7_33 | 48524 | 50086 | - | 2.A.17.4.5 |
Gene ID: Rep_505_c_7_19
Type: TC
Location: 19588 - 20304 (+)
Type: TC
Location: 19588 - 20304 (+)
Gene ID: Rep_505_c_7_20
Type: TC
Location: 20374 - 21012 (-)
Type: TC
Location: 20374 - 21012 (-)
Gene ID: Rep_505_c_7_21
Type: sulfatase
Location: 21322 - 22890 (+)
Type: sulfatase
Location: 21322 - 22890 (+)
Gene ID: Rep_505_c_7_22
Type: TF
Location: 23075 - 27022 (-)
Type: TF
Location: 23075 - 27022 (-)
Gene ID: Rep_505_c_7_23
Type: TC
Location: 27291 - 30620 (+)
Type: TC
Location: 27291 - 30620 (+)
Gene ID: Rep_505_c_7_24
Type: pfam
Location: 30632 - 32479 (+)
Type: pfam
Location: 30632 - 32479 (+)
Gene ID: Rep_505_c_7_25
Type: CAZyme
Location: 32526 - 34439 (+)
Type: CAZyme
Location: 32526 - 34439 (+)
Gene ID: Rep_505_c_7_26
Type: CAZyme
Location: 34517 - 36850 (+)
Type: CAZyme
Location: 34517 - 36850 (+)
Gene ID: Rep_505_c_7_27
Type:
Location: 36874 - 39114 (+)
Type:
Location: 36874 - 39114 (+)
Gene ID: Rep_505_c_7_28
Type: CAZyme
Location: 39559 - 43149 (-)
Type: CAZyme
Location: 39559 - 43149 (-)
Gene ID: Rep_505_c_7_29
Type: CAZyme
Location: 43161 - 44981 (-)
Type: CAZyme
Location: 43161 - 44981 (-)
Gene ID: Rep_505_c_7_30
Type: CAZyme
Location: 44987 - 46615 (-)
Type: CAZyme
Location: 44987 - 46615 (-)
Gene ID: Rep_505_c_7_31
Type:
Location: 46776 - 46868 (+)
Type:
Location: 46776 - 46868 (+)
Gene ID: Rep_505_c_7_32
Type: sulfatase
Location: 46865 - 48436 (+)
Type: sulfatase
Location: 46865 - 48436 (+)
Gene ID: Rep_505_c_7_33
Type: TC
Location: 48524 - 50086 (-)
Type: TC
Location: 48524 - 50086 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola excrementipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_505_c_7_21 | vegan > omnivore | 1.19577 | 0.02882 |