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Cluster: Rep_505_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_505_c_6 Rep_505_c_6_88 116140 118062 + GH146
TF Rep_505_c_6 Rep_505_c_6_89 118258 119070 - HTH_AraC
TC Rep_505_c_6 Rep_505_c_6_90 119241 120320 + 2.A.6.2.44
TC Rep_505_c_6 Rep_505_c_6_91 120333 120950 + 2.A.6.2.22
TC Rep_505_c_6 Rep_505_c_6_92 121026 123524 + 2.A.6.2.22
TC Rep_505_c_6 Rep_505_c_6_93 123524 124888 + 2.A.6.2.25
STP Rep_505_c_6 Rep_505_c_6_94 125164 125691 - cNMP_binding
TC Rep_505_c_6 Rep_505_c_6_95 125948 126985 - 8.A.5.1.6
TC Rep_505_c_6 Rep_505_c_6_96 127004 127849 - 8.A.5.1.4
Gene ID: Rep_505_c_6_88
Type: CAZyme
Location: 116140 - 118062 (+)
Gene ID: Rep_505_c_6_89
Type: TF
Location: 118258 - 119070 (-)
Gene ID: Rep_505_c_6_90
Type: TC
Location: 119241 - 120320 (+)
Gene ID: Rep_505_c_6_91
Type: TC
Location: 120333 - 120950 (+)
Gene ID: Rep_505_c_6_92
Type: TC
Location: 121026 - 123524 (+)
Gene ID: Rep_505_c_6_93
Type: TC
Location: 123524 - 124888 (+)
Gene ID: Rep_505_c_6_94
Type: STP
Location: 125164 - 125691 (-)
Gene ID: Rep_505_c_6_95
Type: TC
Location: 125948 - 126985 (-)
Gene ID: Rep_505_c_6_96
Type: TC
Location: 127004 - 127849 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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