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Cluster: Rep_505_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_505_c_6 Rep_505_c_6_25 38015 38983 + 1.A.34.1.3
TF Rep_505_c_6 Rep_505_c_6_26 38996 39343 + MerR
STP Rep_505_c_6 Rep_505_c_6_27 39420 41693 - HD
CAZyme Rep_505_c_6 Rep_505_c_6_28 41772 43034 - GH23
pfam Rep_505_c_6 Rep_505_c_6_29 43038 43856 - DUF5683
pfam Rep_505_c_6 Rep_505_c_6_30 43869 44765 - ParBc | HTH_ParB | ParB_dimer
TC Rep_505_c_6 Rep_505_c_6_31 44770 45537 - 8.A.3.2.3
pfam Rep_505_c_6 Rep_505_c_6_32 45751 46521 + SurE
CAZyme Rep_505_c_6 Rep_505_c_6_33 46518 47666 + GT19
pfam Rep_505_c_6 Rep_505_c_6_34 47733 48575 - CTP_transf_1
TC Rep_505_c_6 Rep_505_c_6_35 48592 50673 - 3.A.16.1.1
Gene ID: Rep_505_c_6_25
Type: TC
Location: 38015 - 38983 (+)
Gene ID: Rep_505_c_6_26
Type: TF
Location: 38996 - 39343 (+)
Gene ID: Rep_505_c_6_27
Type: STP
Location: 39420 - 41693 (-)
Gene ID: Rep_505_c_6_28
Type: CAZyme
Location: 41772 - 43034 (-)
Gene ID: Rep_505_c_6_29
Type: pfam
Location: 43038 - 43856 (-)
Gene ID: Rep_505_c_6_30
Type: pfam
Location: 43869 - 44765 (-)
Gene ID: Rep_505_c_6_31
Type: TC
Location: 44770 - 45537 (-)
Gene ID: Rep_505_c_6_32
Type: pfam
Location: 45751 - 46521 (+)
Gene ID: Rep_505_c_6_33
Type: CAZyme
Location: 46518 - 47666 (+)
Gene ID: Rep_505_c_6_34
Type: pfam
Location: 47733 - 48575 (-)
Gene ID: Rep_505_c_6_35
Type: TC
Location: 48592 - 50673 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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