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Cluster: Rep_505_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_505_c_4 Rep_505_c_4_13 10899 13331 + GT2
pfam Rep_505_c_4 Rep_505_c_4_14 13336 14646 + SpoIID
TC Rep_505_c_4 Rep_505_c_4_15 14651 15931 + 2.A.1.25.5
TF Rep_505_c_4 Rep_505_c_4_16 15938 16834 - HTH_1
pfam Rep_505_c_4 Rep_505_c_4_17 16846 17427 - DUF6621
TC Rep_505_c_4 Rep_505_c_4_18 17928 19892 + 1.B.14.6.1
NULL(UNKNOWN) Rep_505_c_4 Rep_505_c_4_19 20085 21008 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_505_c_4 Rep_505_c_4_20 21020 22768 + 8.A.46.1.5
Gene ID: Rep_505_c_4_13
Type: CAZyme
Location: 10899 - 13331 (+)
Gene ID: Rep_505_c_4_14
Type: pfam
Location: 13336 - 14646 (+)
Gene ID: Rep_505_c_4_15
Type: TC
Location: 14651 - 15931 (+)
Gene ID: Rep_505_c_4_16
Type: TF
Location: 15938 - 16834 (-)
Gene ID: Rep_505_c_4_17
Type: pfam
Location: 16846 - 17427 (-)
Gene ID: Rep_505_c_4_18
Type: TC
Location: 17928 - 19892 (+)
Gene ID: Rep_505_c_4_19
Type:
Location: 20085 - 21008 (+)
Gene ID: Rep_505_c_4_20
Type: TC
Location: 21020 - 22768 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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