Cluster: Rep_505_CGC1
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 8
- Substrate:
- Genome ID: Rep_505
- CGC Family ID: CGCFAM_02291
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_505_c_0 | Rep_505_c_0_31 | 38246 | 41650 | + | 1.B.14.6.13 |
| TC | Rep_505_c_0 | Rep_505_c_0_32 | 41664 | 43247 | + | 8.A.46.2.2 |
| pfam | Rep_505_c_0 | Rep_505_c_0_33 | 43274 | 44383 | + | GH18_BT1044-like |
| sulfatase | Rep_505_c_0 | Rep_505_c_0_34 | 44408 | 45595 | + | S1_48 |
| CAZyme | Rep_505_c_0 | Rep_505_c_0_35 | 45630 | 47054 | + | GH18 |
| pfam | Rep_505_c_0 | Rep_505_c_0_36 | 47105 | 48598 | + | BACON |
| NULL(UNKNOWN) | Rep_505_c_0 | Rep_505_c_0_37 | 48804 | 48983 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_505_c_0 | Rep_505_c_0_38 | 48980 | 51202 | + | GH92 |
| STP | Rep_505_c_0 | Rep_505_c_0_39 | 51390 | 52355 | + | FecR |
| CAZyme | Rep_505_c_0 | Rep_505_c_0_40 | 52381 | 54675 | + | GH92 |
| CAZyme | Rep_505_c_0 | Rep_505_c_0_41 | 54678 | 56954 | + | GH92 |
| pfam | Rep_505_c_0 | Rep_505_c_0_42 | 56982 | 58331 | + | MFS_1 |
| CAZyme | Rep_505_c_0 | Rep_505_c_0_43 | 58365 | 59324 | + | GH130_2 |
| CAZyme | Rep_505_c_0 | Rep_505_c_0_44 | 59340 | 61580 | + | GH92 |
| TF | Rep_505_c_0 | Rep_505_c_0_45 | 61843 | 65910 | + | HTH_AraC |
| CAZyme | Rep_505_c_0 | Rep_505_c_0_46 | 66109 | 67137 | + | GH43_24 |
| CAZyme | Rep_505_c_0 | Rep_505_c_0_47 | 67362 | 69848 | - | GH43_19 | GH43_9 |
Gene ID: Rep_505_c_0_31
Type: TC
Location: 38246 - 41650 (+)
Type: TC
Location: 38246 - 41650 (+)
Gene ID: Rep_505_c_0_32
Type: TC
Location: 41664 - 43247 (+)
Type: TC
Location: 41664 - 43247 (+)
Gene ID: Rep_505_c_0_33
Type: pfam
Location: 43274 - 44383 (+)
Type: pfam
Location: 43274 - 44383 (+)
Gene ID: Rep_505_c_0_34
Type: sulfatase
Location: 44408 - 45595 (+)
Type: sulfatase
Location: 44408 - 45595 (+)
Gene ID: Rep_505_c_0_35
Type: CAZyme
Location: 45630 - 47054 (+)
Type: CAZyme
Location: 45630 - 47054 (+)
Gene ID: Rep_505_c_0_36
Type: pfam
Location: 47105 - 48598 (+)
Type: pfam
Location: 47105 - 48598 (+)
Gene ID: Rep_505_c_0_37
Type:
Location: 48804 - 48983 (+)
Type:
Location: 48804 - 48983 (+)
Gene ID: Rep_505_c_0_38
Type: CAZyme
Location: 48980 - 51202 (+)
Type: CAZyme
Location: 48980 - 51202 (+)
Gene ID: Rep_505_c_0_39
Type: STP
Location: 51390 - 52355 (+)
Type: STP
Location: 51390 - 52355 (+)
Gene ID: Rep_505_c_0_40
Type: CAZyme
Location: 52381 - 54675 (+)
Type: CAZyme
Location: 52381 - 54675 (+)
Gene ID: Rep_505_c_0_41
Type: CAZyme
Location: 54678 - 56954 (+)
Type: CAZyme
Location: 54678 - 56954 (+)
Gene ID: Rep_505_c_0_42
Type: pfam
Location: 56982 - 58331 (+)
Type: pfam
Location: 56982 - 58331 (+)
Gene ID: Rep_505_c_0_43
Type: CAZyme
Location: 58365 - 59324 (+)
Type: CAZyme
Location: 58365 - 59324 (+)
Gene ID: Rep_505_c_0_44
Type: CAZyme
Location: 59340 - 61580 (+)
Type: CAZyme
Location: 59340 - 61580 (+)
Gene ID: Rep_505_c_0_45
Type: TF
Location: 61843 - 65910 (+)
Type: TF
Location: 61843 - 65910 (+)
Gene ID: Rep_505_c_0_46
Type: CAZyme
Location: 66109 - 67137 (+)
Type: CAZyme
Location: 66109 - 67137 (+)
Gene ID: Rep_505_c_0_47
Type: CAZyme
Location: 67362 - 69848 (-)
Type: CAZyme
Location: 67362 - 69848 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola excrementipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.