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Cluster: Rep_499_CGC97

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_499_c_136 Rep_499_c_136_3 4278 6086 + PL35
CAZyme Rep_499_c_136 Rep_499_c_136_4 6120 7664 + GH109
TF Rep_499_c_136 Rep_499_c_136_5 7745 11725 - HTH_AraC
NULL(UNKNOWN) Rep_499_c_136 Rep_499_c_136_6 11833 11925 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_499_c_136 Rep_499_c_136_7 11948 14194 + GH3
CAZyme Rep_499_c_136 Rep_499_c_136_8 14339 15610 - GH154
CAZyme Rep_499_c_136 Rep_499_c_136_9 15628 16929 - GH88
TC Rep_499_c_136 Rep_499_c_136_10 17266 20460 + 1.B.14.6.1
Gene ID: Rep_499_c_136_3
Type: CAZyme
Location: 4278 - 6086 (+)
Gene ID: Rep_499_c_136_4
Type: CAZyme
Location: 6120 - 7664 (+)
Gene ID: Rep_499_c_136_5
Type: TF
Location: 7745 - 11725 (-)
Gene ID: Rep_499_c_136_6
Type:
Location: 11833 - 11925 (+)
Gene ID: Rep_499_c_136_7
Type: CAZyme
Location: 11948 - 14194 (+)
Gene ID: Rep_499_c_136_8
Type: CAZyme
Location: 14339 - 15610 (-)
Gene ID: Rep_499_c_136_9
Type: CAZyme
Location: 15628 - 16929 (-)
Gene ID: Rep_499_c_136_10
Type: TC
Location: 17266 - 20460 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_499_c_136_3 vegan > omnivore 1.20570 0.01332

🧭 Explore Read Mapping of CGC

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