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Cluster: Rep_499_CGC87

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_499_c_123 Rep_499_c_123_1 120 1373 + GH109
STP Rep_499_c_123 Rep_499_c_123_2 1345 1971 - Sigma70_r4_2
CAZyme Rep_499_c_123 Rep_499_c_123_3 2057 4927 - CBM32
CAZyme Rep_499_c_123 Rep_499_c_123_4 5087 5965 - CBM32
pfam Rep_499_c_123 Rep_499_c_123_5 5978 7882 - SusD_RagB | SusD-like_3
TC Rep_499_c_123 Rep_499_c_123_6 7894 11277 - 1.B.14.6.1
STP Rep_499_c_123 Rep_499_c_123_7 11323 12021 - FecR
NULL(UNKNOWN) Rep_499_c_123 Rep_499_c_123_8 12197 12436 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_499_c_123 Rep_499_c_123_9 12601 14448 + GH110
Gene ID: Rep_499_c_123_1
Type: CAZyme
Location: 120 - 1373 (+)
Gene ID: Rep_499_c_123_2
Type: STP
Location: 1345 - 1971 (-)
Gene ID: Rep_499_c_123_3
Type: CAZyme
Location: 2057 - 4927 (-)
Gene ID: Rep_499_c_123_4
Type: CAZyme
Location: 5087 - 5965 (-)
Gene ID: Rep_499_c_123_5
Type: pfam
Location: 5978 - 7882 (-)
Gene ID: Rep_499_c_123_6
Type: TC
Location: 7894 - 11277 (-)
Gene ID: Rep_499_c_123_7
Type: STP
Location: 11323 - 12021 (-)
Gene ID: Rep_499_c_123_8
Type:
Location: 12197 - 12436 (+)
Gene ID: Rep_499_c_123_9
Type: CAZyme
Location: 12601 - 14448 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_499_c_123_8 vegan > omnivore 1.84196 0.01332

🧭 Explore Read Mapping of CGC

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