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Cluster: Rep_499_CGC79

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_499_c_106 Rep_499_c_106_4 2858 5356 + 3.A.12.1.1
pfam Rep_499_c_106 Rep_499_c_106_5 5376 6023 + LolA_2
STP Rep_499_c_106 Rep_499_c_106_6 6062 7012 + Pyr_redox_2
TC Rep_499_c_106 Rep_499_c_106_7 7589 8986 + 1.B.14.6.13
TC Rep_499_c_106 Rep_499_c_106_8 8996 10669 + 1.B.14.6.13
TC Rep_499_c_106 Rep_499_c_106_9 10686 12257 + 8.A.46.2.1
CAZyme Rep_499_c_106 Rep_499_c_106_10 12279 13430 + GH18
pfam Rep_499_c_106 Rep_499_c_106_11 13466 14608 + BT_3987-like_N | Laminin_G_3
STP Rep_499_c_106 Rep_499_c_106_12 14769 15299 + Sigma70_r2 | Sigma70_r4_2
CAZyme Rep_499_c_106 Rep_499_c_106_13 15406 17835 - GH20
Gene ID: Rep_499_c_106_4
Type: TC
Location: 2858 - 5356 (+)
Gene ID: Rep_499_c_106_5
Type: pfam
Location: 5376 - 6023 (+)
Gene ID: Rep_499_c_106_6
Type: STP
Location: 6062 - 7012 (+)
Gene ID: Rep_499_c_106_7
Type: TC
Location: 7589 - 8986 (+)
Gene ID: Rep_499_c_106_8
Type: TC
Location: 8996 - 10669 (+)
Gene ID: Rep_499_c_106_9
Type: TC
Location: 10686 - 12257 (+)
Gene ID: Rep_499_c_106_10
Type: CAZyme
Location: 12279 - 13430 (+)
Gene ID: Rep_499_c_106_11
Type: pfam
Location: 13466 - 14608 (+)
Gene ID: Rep_499_c_106_12
Type: STP
Location: 14769 - 15299 (+)
Gene ID: Rep_499_c_106_13
Type: CAZyme
Location: 15406 - 17835 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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