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Cluster: Rep_499_CGC74

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_499_c_102 Rep_499_c_102_3 2922 6140 + 1.B.14.6.1
pfam Rep_499_c_102 Rep_499_c_102_4 6165 8180 + SusD_RagB | SusD-like_3
TC Rep_499_c_102 Rep_499_c_102_5 8233 11082 + 1.B.14.6.2
pfam Rep_499_c_102 Rep_499_c_102_6 11104 12834 + SusD_RagB | SusD-like_3
CAZyme Rep_499_c_102 Rep_499_c_102_7 12883 14991 + PL11_1
pfam Rep_499_c_102 Rep_499_c_102_8 15271 17031 - PDDEXK_9 | AAA-ATPase_like
CAZyme Rep_499_c_102 Rep_499_c_102_9 17743 19377 - CE12 | CE12
CAZyme Rep_499_c_102 Rep_499_c_102_10 19501 20643 - GH105
CAZyme Rep_499_c_102 Rep_499_c_102_11 20888 22729 + PL11_1
CAZyme Rep_499_c_102 Rep_499_c_102_12 22733 24139 + GH105
Gene ID: Rep_499_c_102_3
Type: TC
Location: 2922 - 6140 (+)
Gene ID: Rep_499_c_102_4
Type: pfam
Location: 6165 - 8180 (+)
Gene ID: Rep_499_c_102_5
Type: TC
Location: 8233 - 11082 (+)
Gene ID: Rep_499_c_102_6
Type: pfam
Location: 11104 - 12834 (+)
Gene ID: Rep_499_c_102_7
Type: CAZyme
Location: 12883 - 14991 (+)
Gene ID: Rep_499_c_102_8
Type: pfam
Location: 15271 - 17031 (-)
Gene ID: Rep_499_c_102_9
Type: CAZyme
Location: 17743 - 19377 (-)
Gene ID: Rep_499_c_102_10
Type: CAZyme
Location: 19501 - 20643 (-)
Gene ID: Rep_499_c_102_11
Type: CAZyme
Location: 20888 - 22729 (+)
Gene ID: Rep_499_c_102_12
Type: CAZyme
Location: 22733 - 24139 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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