Cluster: Rep_499_CGC73
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_499
- CGC Family ID: CGCFAM_00404
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_499_c_99 | Rep_499_c_99_4 | 3116 | 4756 | + | GH33 |
| TC | Rep_499_c_99 | Rep_499_c_99_5 | 4760 | 5995 | + | 2.A.1.14.14 |
| CAZyme | Rep_499_c_99 | Rep_499_c_99_6 | 6015 | 7439 | + | CE20 |
| TC | Rep_499_c_99 | Rep_499_c_99_7 | 7510 | 10773 | + | 1.B.14.6.1 |
| pfam | Rep_499_c_99 | Rep_499_c_99_8 | 10821 | 12248 | + | SusD_RagB | SusD-like_2 | SusD-like_3 |
| CAZyme | Rep_499_c_99 | Rep_499_c_99_9 | 12261 | 13370 | + | GH33 |
| pfam | Rep_499_c_99 | Rep_499_c_99_10 | 13402 | 14946 | + | PKD | PKD | Laminin_G_3 | PKD_4 | PKD_4 |
| NULL(UNKNOWN) | Rep_499_c_99 | Rep_499_c_99_11 | 15171 | 15302 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_499_c_99 | Rep_499_c_99_12 | 15302 | 16333 | + | GH130_14 |
| CAZyme | Rep_499_c_99 | Rep_499_c_99_13 | 16330 | 18522 | + | GT4 |
Gene ID: Rep_499_c_99_4
Type: CAZyme
Location: 3116 - 4756 (+)
Type: CAZyme
Location: 3116 - 4756 (+)
Gene ID: Rep_499_c_99_5
Type: TC
Location: 4760 - 5995 (+)
Type: TC
Location: 4760 - 5995 (+)
Gene ID: Rep_499_c_99_6
Type: CAZyme
Location: 6015 - 7439 (+)
Type: CAZyme
Location: 6015 - 7439 (+)
Gene ID: Rep_499_c_99_7
Type: TC
Location: 7510 - 10773 (+)
Type: TC
Location: 7510 - 10773 (+)
Gene ID: Rep_499_c_99_8
Type: pfam
Location: 10821 - 12248 (+)
Type: pfam
Location: 10821 - 12248 (+)
Gene ID: Rep_499_c_99_9
Type: CAZyme
Location: 12261 - 13370 (+)
Type: CAZyme
Location: 12261 - 13370 (+)
Gene ID: Rep_499_c_99_10
Type: pfam
Location: 13402 - 14946 (+)
Type: pfam
Location: 13402 - 14946 (+)
Gene ID: Rep_499_c_99_11
Type:
Location: 15171 - 15302 (+)
Type:
Location: 15171 - 15302 (+)
Gene ID: Rep_499_c_99_12
Type: CAZyme
Location: 15302 - 16333 (+)
Type: CAZyme
Location: 15302 - 16333 (+)
Gene ID: Rep_499_c_99_13
Type: CAZyme
Location: 16330 - 18522 (+)
Type: CAZyme
Location: 16330 - 18522 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp902491285
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_499_c_99_4 | vegan > omnivore | 1.23381 | 0.01332 |
| Rep_499_c_99_5 | vegan > omnivore | 1.01621 | 0.01332 |
| Rep_499_c_99_6 | vegan > omnivore | 1.00567 | 0.01332 |
| Rep_499_c_99_7 | vegan > omnivore | 1.09296 | 0.01332 |
| Rep_499_c_99_8 | vegan > omnivore | 1.12332 | 0.01332 |
| Rep_499_c_99_9 | vegan > omnivore | 1.40881 | 0.01332 |
| Rep_499_c_99_11 | vegan > omnivore | 13.32132 | 0.01332 |