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Cluster: Rep_499_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_499_c_12 Rep_499_c_12_13 14253 16292 - GH182
CAZyme Rep_499_c_12 Rep_499_c_12_14 16338 18305 - GH146
CAZyme Rep_499_c_12 Rep_499_c_12_15 18317 22951 - GH106 | GH43_26
CAZyme Rep_499_c_12 Rep_499_c_12_16 22966 24174 - GH88
sulfatase Rep_499_c_12 Rep_499_c_12_17 24192 25622 - S1_7
sulfatase Rep_499_c_12 Rep_499_c_12_18 25653 26627 - S1_16
CAZyme Rep_499_c_12 Rep_499_c_12_19 26710 27948 - GH154
pfam Rep_499_c_12 Rep_499_c_12_20 27966 29816 - SusD_RagB | SusD-like_3
TC Rep_499_c_12 Rep_499_c_12_21 29839 32943 - 1.B.14.6.1
CAZyme Rep_499_c_12 Rep_499_c_12_22 32973 34037 - GH105
CAZyme Rep_499_c_12 Rep_499_c_12_23 34081 35895 - GH2
Gene ID: Rep_499_c_12_13
Type: CAZyme
Location: 14253 - 16292 (-)
Gene ID: Rep_499_c_12_14
Type: CAZyme
Location: 16338 - 18305 (-)
Gene ID: Rep_499_c_12_15
Type: CAZyme
Location: 18317 - 22951 (-)
Gene ID: Rep_499_c_12_16
Type: CAZyme
Location: 22966 - 24174 (-)
Gene ID: Rep_499_c_12_17
Type: sulfatase
Location: 24192 - 25622 (-)
Gene ID: Rep_499_c_12_18
Type: sulfatase
Location: 25653 - 26627 (-)
Gene ID: Rep_499_c_12_19
Type: CAZyme
Location: 26710 - 27948 (-)
Gene ID: Rep_499_c_12_20
Type: pfam
Location: 27966 - 29816 (-)
Gene ID: Rep_499_c_12_21
Type: TC
Location: 29839 - 32943 (-)
Gene ID: Rep_499_c_12_22
Type: CAZyme
Location: 32973 - 34037 (-)
Gene ID: Rep_499_c_12_23
Type: CAZyme
Location: 34081 - 35895 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_499_c_12_20 vegan > omnivore 1.11357 0.01332
Rep_499_c_12_21 vegan > omnivore 1.09422 0.01332

🧭 Explore Read Mapping of CGC

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