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Cluster: Rep_499_CGC68

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_499_c_88 Rep_499_c_88_9 7057 9282 + GH84
TF Rep_499_c_88 Rep_499_c_88_10 9283 10173 - HTH_AraC | HTH_AraC
CAZyme Rep_499_c_88 Rep_499_c_88_11 10346 13162 + GH2
TC Rep_499_c_88 Rep_499_c_88_12 13296 14681 + 2.A.1.1.55
STP Rep_499_c_88 Rep_499_c_88_13 14840 18121 + TPR_1
sulfatase Rep_499_c_88 Rep_499_c_88_14 18298 19449 - S1_8
CAZyme Rep_499_c_88 Rep_499_c_88_15 19473 22313 - GH3
Gene ID: Rep_499_c_88_9
Type: CAZyme
Location: 7057 - 9282 (+)
Gene ID: Rep_499_c_88_10
Type: TF
Location: 9283 - 10173 (-)
Gene ID: Rep_499_c_88_11
Type: CAZyme
Location: 10346 - 13162 (+)
Gene ID: Rep_499_c_88_12
Type: TC
Location: 13296 - 14681 (+)
Gene ID: Rep_499_c_88_13
Type: STP
Location: 14840 - 18121 (+)
Gene ID: Rep_499_c_88_14
Type: sulfatase
Location: 18298 - 19449 (-)
Gene ID: Rep_499_c_88_15
Type: CAZyme
Location: 19473 - 22313 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_499_c_88_12 vegan > omnivore 1.07631 0.01332
Rep_499_c_88_13 vegan > omnivore 1.04449 0.01332

🧭 Explore Read Mapping of CGC

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